Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01241 ATGATGTTAGACGGAACCGAAGATGAAGACAAGTTTCTGGCCGCCGGAATCGCTGGCCTTCAGCAGAATTCCTTCTACATGCACCGTGCATTGGACTCCAACAATCTCAGGGATGCTCTCAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCGCACAAGTACTACGAACTATACATGCGCGCCTTCGATCAGTTGAGGAAGCTCGAGATGTTCTTCGAGGAAGAGACTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTTCAACACGCCGGCAACATTTTGCCTCGACTGTATCTCCTCTGTACGGTAGGATCAGTATACATCAAGTCCAAGGAAGCTCCTGCAAAAGATGTTCTTAAGGATCTTGTGGAGATGTGTCGTGGCATTCAGCATCCTGTTCGTGGACTGTTTCTTAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAGTACGAAGGGGATGCGGATACTGTAGCAGATGCTGTAGAGTTTGTAATCCAAAATTTCACTGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCTGCCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGTTGCGTGATCTTGTTGGGAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTTGACCTGGATATGTACAAAGATGTTGTACTTCCCAGAGTACTGGAGCAGGTAGTGAATTGCAAAGATGAGTTGGCTCAGTTCTACTTGATGGATTGCATAATACAAGTCTTCCCCGATGAGTATCACTTGCAAACTCTTGATGTGCTGCTGGGTGCTTACCCTCAACTTCAGCCATTTGTTGATATCAAGACAATACTGTCCCAGTTAATGGAAAGGCTTTCAAATTATGCTGCTTCGAGTGCAGAGGTGTTGCCAGAGTTTTTGCAAGTGGAAGCATTTTCCAAATTAAGCAATGCCATTGGCAAGGTGATAGAGGCACAGCCTGACATGCCCACTGTTGGAGTTGTAACTTTATATTCATCCCTTCTCACCTTTACTCTTCATGTCCACCCTGACCGACTTGATTATGCTGATCAAGTTTTGGGAGCATGTGTGAAAAAACTCTCTGGCAAAGGGAAAATCGAGGACAACAGGGCAACCAAGCAGATTGTTGCTCTATTAAGTGCCCCACTAGAGAAATATAACGATATTATGATTGCTTTGAAGCTTTCAAATTATCCTCGCATAATGGAATACCTTGATATTCCAACTACTAAGGTCATGGCAACTGTTATTATTCAGAGCATTATGAAAAATGGAACACGCATTTCTACTTCAGAAAAGGTTGAAGCATTGTTTGAACTTTTAAAGGGGCTTATCAAGGATTCTGATGGTATTCCAAATAATGAGTTGGATGAAGATGATTTCAAAGAGGAGCAGAATTCTGTTTCCCGTCTAATCCAGATGCTTTATAATGATGATCCAGAAGAAATGTTTAAGATCATAGATACTGTGAGGAAGCACATACTGGCTGGAGGACCAAAACGTCTCCCTTTCACTGTTCCACCTCTTGTTTTTTCTTCTTTAAAGTTGGTCAGACAATTGCAAGGTCAGGAAGAAAATCCTTTTGGAGATGATGCATCAACAACACCGAAGAAAATTTTTCAGCTTCTAAATCAGACCATTGAGACCTTGTCAGGTGTCCTGGCACCAGAATTAGCCCTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTGGAACCCGTTGCTTATGAATTTTTCACTCAAGCTTATATTCTATATGAAGAAGAAATTTCTGATTCCAGAGCACAGATCACAGCGATCCATTTAATAATAGGAACTCTTCAAAGGATGCATGTCTTTGGTGTTGAAAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCTGTGTACGCATGCTCACATTTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGGGTCCTATTGTGTCTCAAGCGGGCTTTAAGAATTGCAAATGCTGCCCAACAAATGGCAAATGCAGCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAATCACCGTTGCTGCTATCCAGGGCTTGATTGAGTTAATTATGAATGAAATGCAGAGTGACAGCACAACTCCAGATCCAGCTGCCGATGCTTTCTTAGCCAGTACTATGCGATACATAGAGTTCCAGAAACAAAAAGGTGGCACAGTTGGCGAGAAGTATGAAGCCATCAAGGTTTCACATGCTGGATGA 2385 0.4289 MMLDGTEDEDKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVADAVEFVIQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDVVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQPFVDIKTILSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTVGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGKGKIEDNRATKQIVALLSAPLEKYNDIMIALKLSNYPRIMEYLDIPTTKVMATVIIQSIMKNGTRISTSEKVEALFELLKGLIKDSDGIPNNELDEDDFKEEQNSVSRLIQMLYNDDPEEMFKIIDTVRKHILAGGPKRLPFTVPPLVFSSLKLVRQLQGQEENPFGDDASTTPKKIFQLLNQTIETLSGVLAPELALQLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSRAQITAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMANAARGSTGSVMLFIEILNKYLYFFEKGNLQITVAAIQGLIELIMNEMQSDSTTPDPAADAFLASTMRYIEFQKQKGGTVGEKYEAIKVSHAG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01241 794 SUPERFAMILY ARM repeat 208 517 IPR016024 -
Cca06g01241 794 PIRSF Retromer_Vps35 2 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cca06g01241 794 SUPERFAMILY ARM repeat 462 749 IPR016024 -
Cca06g01241 794 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cca06g01241 794 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
Cca06g01241 794 Gene3D - 466 775 IPR042491 -
Cca06g01241 794 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01241 Cca-Chr6 26897592 26909322 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01241 K18468 - gmx:100809289 1519.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01241 06 26897592 26909322 Cca06g01241 06 26897592 26909322 ECH