Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01201 ATGAGTGAAGAAGACCTCGTACCACTGTCACCGATCAGTTTCCTGGAACATGCGGCCAATTCCTATGGTGATGAGATCTCCATCATCTACGATCATAATGTTAGATTTTGTTGGAGACAAACCCATCAAAGATGCCTAAAGCTTGCTTCTGCTTTGGTTAACTTAGGGATTTCTCACAACGATACTGTTGCAGCTTTGGCTCCAAATATTCCAGCACTGTACGAGCTTCATTTTGGTGTTCCAATGGCAGGAGCTGTTTTTTCTGCGCTCAATACTCAATTGGATACAACATCATTGGCACTAATATTGGAACAATTAGAGCCATGCAAAATCATGTTTGTGGACTACCACTTAATTGATTCTGCCCTCAAAGCGTCTGAAATAATGTCCCACAGAAAATGCAAGCCACCCCTCATTGTCCTAATACCAGAATATGACCAAGAATCATCTTTCTTAGTGAAGGATATCCCAAAAGGTATCTTAAACTACGACGAAGTTCTTGCAATGGGACAAAAAGATTTTGAGGCTTTAAAACCAAGCAATGAATGCAATCCCATATCAGTGAACTACACATCAGGCTCCACAGGGAGTCTTCCTAAAGGAGTTGTGTATAGTCATAGAGGTGCCTATCTCAATTCACTAGGAAACATTTCTCGTTTTGAGATGAAACAAATGCCAGTGTTCCTATGGACAGTTGACATGTTTCGTTGCAATGGATGGTGCTTCACTTGGGCAATTTCTGCTCTTGGTGGCACCAATATTTGCCTAAGGAGTGTCTCAGCAAAAGGGATATATGATGCAATTCACCTTCATAGGGTGACTCATTTTTGTGGTTCACCTACCCTTTTGGACATGATTGCTGATGCACCGCCTAGTGATCATAGGCCTCTGCCACATAGGGTGAGTGTCACAGTTGCTGGTGTGCTACCACCGTTTCATGTTCTTAACAAGGTGTCACAACTTGGATTTGATGTGAACATTGGATATGGCATGACAGAGACTTTAGGTCCGTTCATTGTAAGACCATGGAAAGCCAATTCAGATGGTGAATGTACAAAGTTGAATTTTGTTGTCTCAGATGTTGTTGATGTGAAGGATCCAGAGAGTAATGAAAGTACTCCTCATGATGGGAAAACCATCGGTGAAATTATGTTCAAAGGGGATGCTTTGATGCTGGGTTACCTTAAGAATTCACATGCAACTGAAAAGGCTTTTAGAGGTGGTTGGTATAGGACTGGTGACCTTGGTGTTAGACAAACCAATGGTTCTATAACAGTGAAGGACAgagcaaaggatattatctattctaagggagaggctgtgagctcaCTAGAGGTGGAAGCAGTGTTATTGAATCATCCAAAGGTTTTGAAAGTTGCTGTTGTGGGGAAGTGTGATCAGTGCTTGGTGGAATCACCATGTGCTATTGTGAAATTGAGGGATGGATGTAGTGCTAGTGTTGAAGATATCACCAAGTTCTGTGAAGATCATTTGGCTACTCACATGGTTCCTAGGAGTGTGGTATTTGGAGATTTGCCTGTTAATTCAACTGGGAAGGTTCAGAAATTTCGTATCAGGGAGAAGATAAAAAACAATGAGTGGTGTGACTCAATGAATTAG 1620 0.4056 MSEEDLVPLSPISFLEHAANSYGDEISIIYDHNVRFCWRQTHQRCLKLASALVNLGISHNDTVAALAPNIPALYELHFGVPMAGAVFSALNTQLDTTSLALILEQLEPCKIMFVDYHLIDSALKASEIMSHRKCKPPLIVLIPEYDQESSFLVKDIPKGILNYDEVLAMGQKDFEALKPSNECNPISVNYTSGSTGSLPKGVVYSHRGAYLNSLGNISRFEMKQMPVFLWTVDMFRCNGWCFTWAISALGGTNICLRSVSAKGIYDAIHLHRVTHFCGSPTLLDMIADAPPSDHRPLPHRVSVTVAGVLPPFHVLNKVSQLGFDVNIGYGMTETLGPFIVRPWKANSDGECTKLNFVVSDVVDVKDPESNESTPHDGKTIGEIMFKGDALMLGYLKNSHATEKAFRGGWYRTGDLGVRQTNGSITVKDRAKDIIYSKGEAVSSLEVEAVLLNHPKVLKVAVVGKCDQCLVESPCAIVKLRDGCSASVEDITKFCEDHLATHMVPRSVVFGDLPVNSTGKVQKFRIREKIKNNEWCDSMN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01201 539 PANTHER ACYL-ACTIVATING ENZYME 18 531 - -
Cca06g01201 539 SUPERFAMILY Acetyl-CoA synthetase-like 8 531 - -
Cca06g01201 539 Pfam AMP-binding enzyme C-terminal domain 445 519 IPR025110 -
Cca06g01201 539 Gene3D - 2 430 IPR042099 -
Cca06g01201 539 Gene3D - 431 534 IPR045851 -
Cca06g01201 539 CDD ttLC_FACS_AEE21_like 7 527 - -
Cca06g01201 539 PANTHER FATTY ACYL-COA SYNTHETASE FAMILY PROTEIN 18 531 - -
Cca06g01201 539 Pfam AMP-binding enzyme 15 435 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01201 Cca-Chr6 26399825 26412206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01201 73 530 Miscellaneous Gene Families AT1G20560 48.718 4.69e-158 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01201 - - gmx:100819291 932.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01201 06 26399825 26412206 Cca06g01201 06 26399825 26412206 ECH