Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01198 ATGGCGACGACACGATCCGCGCCGCTCCTCAAGCACCTCCTCAGCCGCCTCAGCCAGGCCCGCTCCGTCACCTACATGCCTCGCCCCGGCGACGGCACCCCGCGCGGCGTCACGCTCATCCCGGGCGACGGAATCGGGCCTCTGGTGACCGGCGCCGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTACGACGTGCACGGCGACATGAAGGCGGTGCCGGCGGAGGTGCTGGAGTCGATCAGGAAGAACAAGGTGTGCCTGAAGGGAGGACTGGCCACTCCCATGGGCGGCGGCGTGAGCTCGCTCAACGTGCAGCTGAGAAAGGAGCTCGATCTCTACGCTTCGCTCGTTAACTGCTTCAATCTCCCCGGTCTTCCCACGCGCCACGATAACGTTGACATCGTCGTTATTAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCCGGCGTCGTCGAAAGTCTCAAGGTAATCACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTACCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTtgcagatgggttattcttggaatcttgtcgagaggttgccacgaggtatcctggaatcaagtataatgaaattattgttgacaactgctgcatgcagcttgtttcaaagcctgagcagtttgatgtcatgGTAACCCCCAATCTTTATGGAAATCTAGTTGCAAATACAGCGGCAGGTATAGCTGGAGGCACTGGAGTCATGCCAGGAGGTAACGTTGGGGCTGATCACGCGGTGTTTGAACAAGGAAATGTAGGTAATGAGAAAGTAGTAGAACAACAGAAAGCCAACCCAGTGGCACTTCTTCTTTCGTCGGCCATGATGCTCAGACATCTCCAGTTTCCTGCATTTGCTGACCGGTTGGAAACTGCTGTGAAACGAGTCATTCTGGAGGGCAAATACCGGACAAAGGACCTTGGAGGGACAAGCACAACCCAAGAGGTTGTTGATGCAGTAATACATGCTTTAGATTGA 1083 0.4875 MATTRSAPLLKHLLSRLSQARSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYDVHGDMKAVPAEVLESIRKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATRYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGNVGNEKVVEQQKANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGKYRTKDLGGTSTTQEVVDAVIHALD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01198 360 Pfam Isocitrate/isopropylmalate dehydrogenase 37 355 IPR024084 -
Cca06g01198 360 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 18 357 - -
Cca06g01198 360 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 358 IPR004434 GO:0006099
Cca06g01198 360 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 36 359 - -
Cca06g01198 360 SMART Iso_dh_2 36 355 IPR024084 -
Cca06g01198 360 Gene3D Isopropylmalate Dehydrogenase 24 358 - -
Cca06g01198 360 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 18 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01198 Cca-Chr6 26373827 26378906 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01198 K00030 - gmx:100778831 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01198 06 26373827 26378906 Cca06g01198 06 26373827 26378906 ECH