Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01196 ATGGCCTGTCTGAGCCGCCACCGCCCCTGGCTCGCCTCCTCCGACATGCTCCACCACCGCCCTCTCTCCGCCCACCACCGCCCTCTCCACCACGACGACGCCGACGCCGACGCCGTTTGCCTCCCCCCGCTCTCCTCCGCCTACCGCATCTTCCCCGTCTACGCCATGGGCGCACCCGACCCCACTCCCGCGCCCCAATTCGACGGACCCGACCCCATTTGGGACGCCGTCAGACAGGAAGCCAAGCTCGAGGCGGAGAAGGAACCCATTCTGAGTAGCTTCTTGTACGCTAGTATCTTGGCGCATGATTGCTTGGAGCAAGCATTGGTGTTCGTCGTCGCTAACCGTCTCCAGAACCCCACTCTCTTGGCCACGCAGCTTATGGATATTTTTTCCAATGTCGTTATGCATGACAAACTTATCCAGCGATCCCTTCGTCTTGATGTTCAGGCATTTAAAGATCGGGACCCTGCTTGTTTGTCATATTGCTCAGCTGTTTTGTATATGAAGGGTTATCATGCTCTGCAAGTACATCGAATAGCCCATGCATTGTGGCACCAGGGACGCAAAGTTTTGGCCCTGGCTTTGCAAAGCCGTGTTAGTGAGGTAGTTTTTGGAGTGGACATTCATCCTGCTGCGAAAATTGGGGAGGGAATTTTATTAGATCATGGAACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCAATGCTGCACGGTGTAACATTAGGAGGCACGGGAAAGGAAATAGGTGATCGCCATCCCAAAGTAGGTGAAGGGGCACTAATTGGAGCTAGTGCAACTATACTTGGGAATATAAGGATTGGTGAAGGTGCTATGATAGCTGCAGGCTCCCTGGTGTTAAAAGATGTCCCTCCCCACAGCATTGCGGCAGGGATACCAGCAAAAGTTATTACTGGTCTACAGGAGCATGACCCATCTTTAACCATGAAGCATGATGCTACTAAAGATTTTTTCACACATGTAGCTAATAACTTCAGAGATGAAATGCCCAATGGAGCTAAAAATCCTGATATAAATGGAGTGAACAATTGA 1068 0.5103 MACLSRHRPWLASSDMLHHRPLSAHHRPLHHDDADADAVCLPPLSSAYRIFPVYAMGAPDPTPAPQFDGPDPIWDAVRQEAKLEAEKEPILSSFLYASILAHDCLEQALVFVVANRLQNPTLLATQLMDIFSNVVMHDKLIQRSLRLDVQAFKDRDPACLSYCSAVLYMKGYHALQVHRIAHALWHQGRKVLALALQSRVSEVVFGVDIHPAAKIGEGILLDHGTGVVIGETAIVGNRVSMLHGVTLGGTGKEIGDRHPKVGEGALIGASATILGNIRIGEGAMIAAGSLVLKDVPPHSIAAGIPAKVITGLQEHDPSLTMKHDATKDFFTHVANNFRDEMPNGAKNPDINGVNN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01196 355 PANTHER SERINE ACETYLTRANSFERASE 37 338 - -
Cca06g01196 355 Pfam Bacterial transferase hexapeptide (six repeats) 258 291 IPR001451 -
Cca06g01196 355 TIGRFAM cysE: serine O-acetyltransferase 146 307 IPR005881 GO:0005737|GO:0006535|GO:0009001
Cca06g01196 355 CDD LbH_SAT 205 305 IPR045304 -
Cca06g01196 355 Gene3D Hexapeptide repeat proteins 208 336 - -
Cca06g01196 355 SUPERFAMILY Trimeric LpxA-like enzymes 72 322 IPR011004 -
Cca06g01196 355 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 267 295 IPR018357 GO:0016740
Cca06g01196 355 SMART SATase_N_2_a 73 177 IPR010493 GO:0005737|GO:0006535|GO:0009001
Cca06g01196 355 Pfam Serine acetyltransferase, N-terminal 73 176 IPR010493 GO:0005737|GO:0006535|GO:0009001
Cca06g01196 355 Gene3D serine acetyltransferase, domain 1 60 207 IPR042122 -
Cca06g01196 355 PANTHER SERINE ACETYLTRANSFERASE 2-RELATED 37 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01196 Cca-Chr6 26361704 26365343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01196 51 344 Miscellaneous Gene Families AT2G17640 73.333 5.45e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01196 K00640 - gmx:100775449 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01196 06 26361704 26365343 Cca06g01196 06 26361704 26365343 ECH