Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01195 ATGATTACTCAAATACCCTCGTCAAATCAAAATATTGCAGCGTTATGCTGGATCCAAATCCTCTCTAGTTCCCCACACTCAGCTTATGCTGGTAAGACTTGTGTTGCAAGAGTGATGGCATCAGGTGAAGGGGATTCTAGTGGAATGATGGATACTCATGTAGAAGATTCTTCTATACCTGAGGAGCATTTGCCTGATGCAAATCATTATTACGAAGATGGAAGCAGTGGAAATCTTCCATTGGAAAATGGTTTGTCTGATGGAAATCAAGGTCCCGTTGATACTGACGATCAACTTCTACAAATGGTTATGGACCTCAAGTTTCAGAATGATTTCCTGAAGTCCCAGTTTGAGGGATTTAAAAATGTAAACAGTGTACATAGTGACTCTAGTATACAGAAAGGAGTTGATGGGTCGGAAGATGGGGAATCTGACATTGTGAAAGAACTACAGGAAAGGATACAATCGTTAAATAAAGAATTTCTGGAAGAAAAACAAACAAGAATTGCATCAGAAGAGGCTTTGAAGCATCTTCAAACAGCATACTCAGAGGCAGACGCAAAGGCCCAAGAGCTCTCTGAAAAGCTTGCTGAAGCTGAAACGAAGTTGGACCAAGAAATAAAAGAGCGTGAAGAGAAGTACTCTGAACTTGACACCAAGTTTAATAGGCTTCACAAACGAGCAAAACAGCGCATTCAAGAAATTCAAAAGGAAAAAGATGATCTCGAAGCCCGCTTCTCTGAGGTGAATGAAATGGCAGAGCGAGCATCATCCCAACAATCAGCCTTGCAACAAGAATTAGAGCGCACTAGGAAGCAAGCAAACGAGGCATTGAAAGCCATGGATGCTGATAGACAACAACTAAGAAGTGCAAACAACAATCTTCGAGATACCATTGAAGAGTTAAGGCGTTCATTGCAACCCAAAGAGAGTGCAATTGAGGCATTGCAACAGTCACTTGCAGAAAAGGAACAGATGTTGGAAGATATGAGGGGGTTGCTTCAGGCTTCTGATGAAAAAAGGCAAGCTGCACTAGCTGAGCTCTCAGTTAAACATCAAAAGAATATAGAGAGTTTGGAGGCTCAACTTAATGACGCATTGTCTGATAGAAATAAGGCAACTGAATCCATTTCTTCACTGCAGGTTCTAGTTGCAGAAAAAGAATCCAGAATTGCAGAGATGGAAGCTGCATCAACTGGGGAAGCTGCACGACTCAGAGCAGCTGTGGAAAGTGTGAAAGGGGAGCTTTCTCACCTAAAAGAGGAGCACGAAAAAGAAAGGGAAAGCTGGAAGACTGCTTCTCAGGCACTTAAAGCAAAACTTGAAATTGCTGAGAGCAATTGCATACGTGCAGAAGTTGAAGTGGCAAAAATAAGAAGTCAGCTGGAATCAGAGGTATCCGCACAAACAAGAATCCTCAATATGAGAGATGCTGAATTGTTGGCTGCCAAAGAAGAGATCAGTTCTCTTGAGAAGGAATTTTCTTCATACAAGGTTCGCGCACATGCACTTCTTCAAAAGAAGGATGCTGAACTGGCTGCTGCTAAAGATTCTGAACAACTCAAAGCTCTAGAGGAAACCCTGAAAGAGGTTGAAAATGAAGTATTATCAATAACAGAAGAAAGGGATAAAGTTCTTCAAGATCTTCAATCTACTTTGGCTAATCACGAGAATGAACTTGCAGAAAGAGACACGGCCCTTGAAAATACCAAGCAACAGATAAGGAGCTTAGAAATAAAGCTTGACTCAGCTAATGTTCAACACCTAAAAGAGAAAGAGGAATGGGGACTAAGTCTTCAAAATGTAGAAGAAACATGGAGAATCAAATGTGAGGCAATGAAGGCTGAAAATGAAGCAACTGCTACAAAAGATATGCAAAAGGAATTGGAAGAGCTCAAGCAGCGATGTAAAAAACTGAAGGAAGAGCATGCTTCATTTCATGATCTTGCTGATAGAATGATTGAGGAGAAAGACTATGAAATATCTAGACTTTTAGACGAAAATAAAAATCTTCGCCAGTCTCTTCAATCAAAACCACTAGTTGATCAAAATGATAATTATACAACAGCCTTGTATAAATTGGATTCAACGAACTTAAGCCCCTCAGCTGAAGAACAGCAAATTCTGGTTTTGGCTAGACAACAAGCCCAAAGAGAGGAGGAGCTAGGACAGTCACAGCGCCATATTTTAGCTCTTCAAGAAGAAATTGAGGAGCTTGAACGTGAGAATCGTCTTCACAGCCAACAGGAGGCAATGTTAAAGGCTGAGCTTCGCGACATGGAAAGATCAAAGAAAAGGGAAGGTGTAGATATGACTTATTTGAAAAATGTTATCTTAAAGCTGCTTGAGACTGGTGAAGTAGAGGTATTGCTACCAGTTATTGGAATGCTGCTTCAGTTTAGTCCAGAAGAGGTGCAGAAGTGTCAACAAGCATATCAGATCTCAACGGCTGTTCCACCAAACCCTGCAAGCGAAACTTCAGGATCTGGGCTATCGCTTTTCTCGAGATTCTCATTTTCTTAA 2523 0.4102 MITQIPSSNQNIAALCWIQILSSSPHSAYAGKTCVARVMASGEGDSSGMMDTHVEDSSIPEEHLPDANHYYEDGSSGNLPLENGLSDGNQGPVDTDDQLLQMVMDLKFQNDFLKSQFEGFKNVNSVHSDSSIQKGVDGSEDGESDIVKELQERIQSLNKEFLEEKQTRIASEEALKHLQTAYSEADAKAQELSEKLAEAETKLDQEIKEREEKYSELDTKFNRLHKRAKQRIQEIQKEKDDLEARFSEVNEMAERASSQQSALQQELERTRKQANEALKAMDADRQQLRSANNNLRDTIEELRRSLQPKESAIEALQQSLAEKEQMLEDMRGLLQASDEKRQAALAELSVKHQKNIESLEAQLNDALSDRNKATESISSLQVLVAEKESRIAEMEAASTGEAARLRAAVESVKGELSHLKEEHEKERESWKTASQALKAKLEIAESNCIRAEVEVAKIRSQLESEVSAQTRILNMRDAELLAAKEEISSLEKEFSSYKVRAHALLQKKDAELAAAKDSEQLKALEETLKEVENEVLSITEERDKVLQDLQSTLANHENELAERDTALENTKQQIRSLEIKLDSANVQHLKEKEEWGLSLQNVEETWRIKCEAMKAENEATATKDMQKELEELKQRCKKLKEEHASFHDLADRMIEEKDYEISRLLDENKNLRQSLQSKPLVDQNDNYTTALYKLDSTNLSPSAEEQQILVLARQQAQREEELGQSQRHILALQEEIEELERENRLHSQQEAMLKAELRDMERSKKREGVDMTYLKNVILKLLETGEVEVLLPVIGMLLQFSPEEVQKCQQAYQISTAVPPNPASETSGSGLSLFSRFSFS 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01195 840 Coils Coil 402 461 - -
Cca06g01195 840 Coils Coil 175 220 - -
Cca06g01195 840 Gene3D - 201 354 - -
Cca06g01195 840 SMART 1grip 767 811 IPR000237 -
Cca06g01195 840 Coils Coil 722 756 - -
Cca06g01195 840 ProSiteProfiles GRIP domain profile. 764 811 IPR000237 -
Cca06g01195 840 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 85 810 - -
Cca06g01195 840 Coils Coil 225 340 - -
Cca06g01195 840 MobiDBLite consensus disorder prediction 44 63 - -
Cca06g01195 840 Coils Coil 612 649 - -
Cca06g01195 840 Pfam GRIP domain 768 807 IPR000237 -
Cca06g01195 840 Coils Coil 473 500 - -
Cca06g01195 840 Coils Coil 507 594 - -
Cca06g01195 840 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 85 810 - -
Cca06g01195 840 Coils Coil 349 397 - -
Cca06g01195 840 Coils Coil 140 167 - -
Cca06g01195 840 Coils Coil 654 674 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01195 - - gmx:100775990 1338.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01195 06 26341074 26351625 Cca06g01195 06 26341074 26351625 ECH