Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01189 ATGGCGGTTCCTCTAAGAATGAACCACAACAAGCGCGGCGTGCTCGCTCGTTTGAAGACTCTCGTCAACTCTCAGAGCTTCCACTCCCCTGCGCCAAAACGACCAAAGCAAGATCGACCGTCTCCCAAAGAAGACTTGGATTACTCTACTTGCCGAGGCCGCATTGACGTCTCAAATTGGAAGACTTTGGATGCAAAGGAGCTTGGTATAACTAGTTCTATGATTTCATACCCATCTCAGTTTGTCCTGAATCTTCTTCGTAGCAAAGGGTTTGAGTCCTACTTAGTAGGTGGGTGTGTGAGAGATCTACTGCTGAATAGAACTCCAAAAGATTTTGATGTTATCACCACAGCAGAGCTTAAGGAGGTGAGAAAGCAGTTTCGTCGTTCAGCTCGTGCCGAAGTTGTTGGACGTCGTTTTCCAGTATGCTTGGTTCATATAAAAGGTTCTGTTGTTGAGGTGACCAGTTTTGAGACAGGCGCACGAACTTCCAAAGGGAAGGAACAATCGTTATACACCCTGTTGCCCAAGTGCAGTAATAAAAAAGACTTGTTTCGCTGCAAAAACTCCTTGCGCAGGGACTTCACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACATGTGGAATGGCCGATTTGAGGTCCTTAAAGCTAGAAACTGTTATCCCTGCTAAGCTGTCCTTTAAAGAGGATCCTGGAAGAATTTTGCGTGGCTTCAGAATTACAGCTCGGCTTGGTTTATCAATATCAACGGAGACTGAGGCGGCAATCTGGACATATTCTTCACTAGTTAAGAGCTTGGACAAGAATAAAATTATGATTGAATTGAACTACATGCTGTCTTATGGAGCTGGTGAACCATCTCTACGTCTACTTTGGAAATTCAAATTGCTTGAATTTTTACTTCCTGTACATGCAGCATATCTTGATGAACAAGCTATTAAAGAAGATGCCCAGGCTTCCAATATGTTGATGAAATTATTCTTTCATCTGGATAATCTGGTAGCATGCGATCGACCTTGTGATTGCACTCTATGGATTGGATTGCTAGCATTTCACCTGGCATTAGTAGATGATCCTCAAGATGCTCTAGTGGTGTGGGCATTTGCTTCTGTTCTATATCACGGGGAATGGGAAAGTGGTGTTAAATTTGCTAAAGAACATGCAAAAACGAGTGTTAATTTTGTACCTGAAATAAGGACGTCCAGTATATATAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCTGCTCTGGTTGAGCACAATAGTCTTCTTCAGTCCATGTCTAGATACCCATCTTTTCCACGATCTGGCATGGTATTTGTACCCAGGAAAGCAGGGAAACTTGCTTCTGCGATTTTCAAAATGCTGGCTAGTGATGTTCAATTATATAAGAGTGAAAGAAGAAAAAATTCAAAGATAAATTATGGCATGCTTGGTATGGGGCACCTTTCAGAGACTGGATTTGTTTTGGGCAAAATTATTCTTGAAACTATGAATAGTGGAATCGTTGTGGATGGGGAGGATTCTGAAGCTGGACAATGTCAACTGAAGACTGAGGGCACCGAAGAAATTGGTCAATCGCAACTTTCAGATCTAGTAAACCATCAATTAGCGGCAATGAATGATGAAGGACAACTTTTATCAATACCAAATTCAGAAAGTAGGCAAGGAAAAAACAAGAAACGGAAATTGGTTGAGAATATTGCAGTTGCAGATAAGAAAATGGTCTCAGGGAACCATGAATTGTTTGAGAAACATGAATACAAAGAAAATAAAGAAGAGCACCAGAAGCTTGTTAAGTTAAGCCAGAAGGCTAATCTGTCTTCGACGAAGGACTCTTTGCCAGAAAACAAAATTAATAACAGAAAATGGCTGACAAATGATAGGAAGAAAATCACCAGTGCCAATCAAAGTTCTTTAGACCAGGCTAGGCATGTGAAGACGGAGGAACACAGCACATGTCCACCATCACAATCTACATTATCTGAGAATCATCAGGTCATAGCTAACAACTACAACATAGACTTGGATGCAAAAACAACAAATGAGTCAGACTCAAAGAAGAAGAGATCGCATTTATCACTTGTTGAGATCTTTAAAGTGAAAGAAAGCCAGAAACCACATAAAAACAAGCTAAGTAAGCCTCAACTCCCAGTCTCTTCTAGTGATGAATAA 2229 0.406 MAVPLRMNHNKRGVLARLKTLVNSQSFHSPAPKRPKQDRPSPKEDLDYSTCRGRIDVSNWKTLDAKELGITSSMISYPSQFVLNLLRSKGFESYLVGGCVRDLLLNRTPKDFDVITTAELKEVRKQFRRSARAEVVGRRFPVCLVHIKGSVVEVTSFETGARTSKGKEQSLYTLLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTCGMADLRSLKLETVIPAKLSFKEDPGRILRGFRITARLGLSISTETEAAIWTYSSLVKSLDKNKIMIELNYMLSYGAGEPSLRLLWKFKLLEFLLPVHAAYLDEQAIKEDAQASNMLMKLFFHLDNLVACDRPCDCTLWIGLLAFHLALVDDPQDALVVWAFASVLYHGEWESGVKFAKEHAKTSVNFVPEIRTSSIYKSDEEIAKAVTKLASLVMHSIPALVEHNSLLQSMSRYPSFPRSGMVFVPRKAGKLASAIFKMLASDVQLYKSERRKNSKINYGMLGMGHLSETGFVLGKIILETMNSGIVVDGEDSEAGQCQLKTEGTEEIGQSQLSDLVNHQLAAMNDEGQLLSIPNSESRQGKNKKRKLVENIAVADKKMVSGNHELFEKHEYKENKEEHQKLVKLSQKANLSSTKDSLPENKINNRKWLTNDRKKITSANQSSLDQARHVKTEEHSTCPPSQSTLSENHQVIANNYNIDLDAKTTNESDSKKKRSHLSLVEIFKVKESQKPHKNKLSKPQLPVSSSDE 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01189 742 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 718 - -
Cca06g01189 742 MobiDBLite consensus disorder prediction 32 48 - -
Cca06g01189 742 MobiDBLite consensus disorder prediction 26 48 - -
Cca06g01189 742 Pfam Poly A polymerase head domain 94 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cca06g01189 742 Gene3D - 226 481 - -
Cca06g01189 742 SUPERFAMILY Nucleotidyltransferase 68 220 IPR043519 -
Cca06g01189 742 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 718 - -
Cca06g01189 742 MobiDBLite consensus disorder prediction 619 681 - -
Cca06g01189 742 MobiDBLite consensus disorder prediction 718 742 - -
Cca06g01189 742 SUPERFAMILY Poly A polymerase C-terminal region-like 224 368 - -
Cca06g01189 742 Gene3D Beta Polymerase, domain 2 77 225 IPR043519 -
Cca06g01189 742 MobiDBLite consensus disorder prediction 619 633 - -
Cca06g01189 742 CDD NT_ClassII-CCAase 79 220 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cca06g01189 742 Pfam Probable RNA and SrmB- binding site of polymerase A 252 314 IPR032828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01189 Cca-Chr6 26285245 26295355 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01189 - - ccaj:109801320 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01189 06 26285245 26295355 Cca06g01189 06 26285245 26295355 ECH