Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01181 ATGATCCGGCACGCAGCGTTTGACACAGAAGTGGGAATCAAAGGGCGTGGTGTGATTGAACCATTTTTAGTGTCTCTTGCAAAGACTTCAAACCCCATAACGCTAAGGGAGTGCAACCAAATCCACACAAAGCTCATAGTTTCCCAATGCATTTCACAAACTCACTTAACCAACACCCTCTTGAATCTCTACGCCAAATTTGGCCACTTTCGCCATGCCCACCTCCTGTTCGACAAAATGCCTCACCGGAACGTTGTCACATGGACAACCTTAATTTCCGCGCATCTCCGAACTGGGTCACTTCCAAAAGCCTTTGAGATGTTCAATCACATGCGTGCAGCGAATGAGAGGCCCAATGAGTACACATTCTCTGTCCTGCTTCGAGCTTGTGCCACTCCTTCATTGTGGAACGTGGGTTTGCAGATTCATGGCCTTCTCATTCGCTCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTATTGTGTACATGTACTTTAACAATGGTGGTGATCTCGGTGATGCATGTCGTGCTTTTCATGACTTGTTGGAGAGAGACCTTGTTACATGGAATGTTATGATTACTGGGTTTGCTCATGTTGGTGACTTTAGCATGGTTCATAGGTTGTTTTCTGAGATGTGGGGGGTCCAAGGATTGAAGCCTGATGATAGTACCTTTGTTAGCTTACTCAAGTGCTGTTCTTCGTTGGAAGAGCTAAAGCAAACTCATGGGCTTGTGGCTAAGTTTGGTGCTGAAGTTGATGTTGTGGTGGGCAGTGCTCTGGTTGACTTGTATGCCAAATGTGGGGATGTGAGTTCTTGTTGGAAAGTCTTTGACTCCATGGAGGAGAAGGATAGTTTTGTTTGGAGTTCTATCATTTCAGGCTATACCATGAATAACAGAGGGGAGGAAGCTGTGAATTTCTTCAAGGAAATGTGTAGACAAAGGGTGAGACCAGATCAGCATGTGTTATCGAGTACTCTGAAAGCTTGTGTTGAACTAGAGGACTGGAACACAGGAATTCAAGTGCATGGCCAAATGATAAAAAGTGGGCATCAAAATGATTGTTTTGTAGCAAGTGTGTTGTTGACTCTCTATGCTAGTTTCGGTGAACTAATGGGTGTGGAAAAGTTGTTCAGAAGAATTGTTGATAAAGATATTGTAGCATGGAACACAATGATCTTGGCTCATGCTCGGCCGGGGTGGGGTTCTGGTCCCTCTATGAAACTATTACAAGAACTTCGCACGTTGACCACTTTGAGAATTCAAGGTGCCACCCTAGTTGCTGTTTTAAAGTCTTGCGAGAATAAATCAGATTTGCCTGCAGGTAGGCAAATTCATTCACTTATAGTGAAGTCAAGTCTAAGTCATCATACTTTGGTTGGTAATGCATTAGTCCACATGTACACCGAGTGTGGACAAATTGGTGATGCATTTAAAGCTTTTGTTGACATTGTCTATAAAGATGATGGTTCTTGGAGTTCTATAATTGGAACTTACAAACAAAATGGGATGAAATCAGAAGCTTTAGAACTATGCAGAGAGATGTTGGCTGATGGCATCACTTTTACCAGTTATAGCCTTCCACTATGCATTTCGGCTTGCTCACAACTTTCAGCTTTAAATGCGGGTAAACAACTCCATATTTTTGCTATAAAGTGTGGGTACAATGATGATGTATATGTTGGAAGTTCCATTATAGATATGTATGCTAAATGTGGAACCATGGAGGAATCAGAGAAAGTTTTTGGTGAGCAAGTAGAGCCAAATGAAGTAATTTATAATGCCTTGATTTGTGGATATGCTCATCATGGAAAAGCACAAGAAGCAATAGAAGTATTCGAGAAGTTAGAGAAGAATGGTTTGACCCCTAATCATGTAACTTTCTTAGCTGTGCTATCAGCTTGTAGCCACTCGGGTTATGTAGAAGATACTTTGTATTTTTTTACATTGATGATCAACAAATACAAGATTATGCCAGAGTCTGAGCATTATTCGTGCTTAGTTGATGCCTATGGCCGGGCTGGAAGGCTAGAGGAAGCTTACCGGATAGTGCAAAAGGATGGACGTGAATCAGCATGGAGAACATTACTAAGTGCTTGTAGGAATCATAACAACACAAAAATTGGAGAAAAATGTGCAATGAAGATGTTAGAATTGAATCCCACTGATCATGCTTCGTATATTCTTCTTTCAAACATTTACATTGGAGAGGGAAAATGGGAAGAAGCTCTTAAATGTAGGGAGAAAATGGCCAAGATTCGTGTGAAGAAAGATCCAGGAAGTAGTTGGTTGATCTGA 2301 0.4185 MIRHAAFDTEVGIKGRGVIEPFLVSLAKTSNPITLRECNQIHTKLIVSQCISQTHLTNTLLNLYAKFGHFRHAHLLFDKMPHRNVVTWTTLISAHLRTGSLPKAFEMFNHMRAANERPNEYTFSVLLRACATPSLWNVGLQIHGLLIRSGLERDKFAGSSIVYMYFNNGGDLGDACRAFHDLLERDLVTWNVMITGFAHVGDFSMVHRLFSEMWGVQGLKPDDSTFVSLLKCCSSLEELKQTHGLVAKFGAEVDVVVGSALVDLYAKCGDVSSCWKVFDSMEEKDSFVWSSIISGYTMNNRGEEAVNFFKEMCRQRVRPDQHVLSSTLKACVELEDWNTGIQVHGQMIKSGHQNDCFVASVLLTLYASFGELMGVEKLFRRIVDKDIVAWNTMILAHARPGWGSGPSMKLLQELRTLTTLRIQGATLVAVLKSCENKSDLPAGRQIHSLIVKSSLSHHTLVGNALVHMYTECGQIGDAFKAFVDIVYKDDGSWSSIIGTYKQNGMKSEALELCREMLADGITFTSYSLPLCISACSQLSALNAGKQLHIFAIKCGYNDDVYVGSSIIDMYAKCGTMEESEKVFGEQVEPNEVIYNALICGYAHHGKAQEAIEVFEKLEKNGLTPNHVTFLAVLSACSHSGYVEDTLYFFTLMINKYKIMPESEHYSCLVDAYGRAGRLEEAYRIVQKDGRESAWRTLLSACRNHNNTKIGEKCAMKMLELNPTDHASYILLSNIYIGEGKWEEALKCREKMAKIRVKKDPGSSWLI 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01181 766 Gene3D Tetratricopeptide repeat domain 406 546 IPR011990 GO:0005515
Cca06g01181 766 Gene3D Tetratricopeptide repeat domain 34 135 IPR011990 GO:0005515
Cca06g01181 766 Gene3D Tetratricopeptide repeat domain 248 331 IPR011990 GO:0005515
Cca06g01181 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 332 - -
Cca06g01181 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 751 - -
Cca06g01181 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 236 525 - -
Cca06g01181 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 221 IPR002885 -
Cca06g01181 766 TIGRFAM PPR: pentatricopeptide repeat domain 260 285 IPR002885 -
Cca06g01181 766 TIGRFAM PPR: pentatricopeptide repeat domain 188 222 IPR002885 -
Cca06g01181 766 TIGRFAM PPR: pentatricopeptide repeat domain 592 625 IPR002885 -
Cca06g01181 766 TIGRFAM PPR: pentatricopeptide repeat domain 288 320 IPR002885 -
Cca06g01181 766 TIGRFAM PPR: pentatricopeptide repeat domain 86 120 IPR002885 -
Cca06g01181 766 TIGRFAM PPR: pentatricopeptide repeat domain 665 686 IPR002885 -
Cca06g01181 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Cca06g01181 766 Pfam PPR repeat family 186 233 IPR002885 -
Cca06g01181 766 Pfam PPR repeat family 83 131 IPR002885 -
Cca06g01181 766 Pfam PPR repeat family 284 331 IPR002885 -
Cca06g01181 766 Pfam PPR repeat family 589 637 IPR002885 -
Cca06g01181 766 SUPERFAMILY TPR-like 62 754 IPR011990 GO:0005515
Cca06g01181 766 Pfam PPR repeat 492 521 IPR002885 -
Cca06g01181 766 Pfam PPR repeat 664 686 IPR002885 -
Cca06g01181 766 Pfam PPR repeat 564 585 IPR002885 -
Cca06g01181 766 Gene3D Tetratricopeptide repeat domain 332 405 IPR011990 GO:0005515
Cca06g01181 766 Gene3D Tetratricopeptide repeat domain 585 765 IPR011990 GO:0005515
Cca06g01181 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 236 525 - -
Cca06g01181 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 751 - -
Cca06g01181 766 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 332 - -
Cca06g01181 766 Pfam E motif 704 765 IPR046848 -
Cca06g01181 766 Gene3D Tetratricopeptide repeat domain 136 247 IPR011990 GO:0005515
Cca06g01181 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Cca06g01181 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
Cca06g01181 766 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01181 Cca-Chr6 26204757 26207101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01181 91 765 Glycoside Hydrolase AT3G49170 30.825 7.33e-107 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01181 - - gmx:102667531 1347.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01181 06 26204757 26207101 Cca06g01181 06 26204757 26207101 ECH