Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01180 ATGACCGAACCCCAAGACCCCTTCTCCTTCTCCTCCTACCCTCCCATCGACCCCATCAACTTCGATCTCATCGTCATCGGCACCGCCCTATCGGAATCCGTCATCGCCGCCGCCGCATCCGCCGTCGGCAAAACCGTCCTCCACCTCGACCCCAACTCCTTCTACGGCAGCCACTTCGCCTctctctccctccacgacctcacttcctacctcacttccccccaccaccctcccCGCGCCGCCTCCGGCGGCGACTCCGACTACTTCGGTGTCGACCTCGTCCACCAGCACCCGTGCTCCGACGTCGAAATCGCGTTTTGCGACGATGAATCCGAGTCATTTCTCCGCGAAAATTCGCGAAAATTCAACATCGATTTGGGAGGTCCGAGGGCGCTGTTCAGCGCGGACAAGGCGATCAATCTGTTGATGAAATCGGGTGCGTCGCAGTATATGGAGTTCAAGGGAATCGACGAGAGCTTCGTGTACGAGGCGAACGAGGGTTTGGCGAACGTCCCGGATTCTCGCGGAGCGATTTTCAGAGACAAGAAGCTTTCGCTGAAGGAGAAGAACCAGTTGATGAGGTTCTTCAAGCTCGTTCTGAAGCACTTGGACGATACTCAAGAGGAAAAAATTTCGGAGGAGGATCTGGAGATTCCGTTTGTTAGTTTCTTGGAGAAGATGAAGTTGCCGCCTAAGATAAAATCGATTCTTTTGTATGCTATAGCCATGGTAGATTATGATCAAGACAATAATGAGGTTTGTAAAGATTTACTTAAAACAAAAGATGGAATAGATTGTTTAGCTCAGTACAGCTCATCTGTTGGAAGATTTCCCAATGCTCCTGGGGCTTTGCTATATCCTATTTATGGTGAAGGAGAATTACCACAAGCTTTTTGTCGTCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGCCAGTTATTTCTCTGCTTATGGAAAAGGTTACTGGGCTTTATAAAGGTGTTAGGTTAGCTTCAGGTCAAGATTTATATAGCAACCAACTAATCCTGGATCCATCCTTCACGGTTCCATCACTGCCATCTTTGTCTCGAAGAGATGTTCTCACTGAAAGGCTCCAAATGTTGAGTCAGAGAGATATTAAAGGAATGGTGGCCAGGGGAATATGCATCACAAAGAGTTCAATTAAACCAGATGTATCAAATTGCTCAGTGGTGTATCCTCCTCGATCTTTGTATCCTGAACAGGTGACATCAATCAAAGCTCTTCAGATAGGATCAAATCTTGCTGTTTGTCCTGCGGGAACCTTTATTTTATACTTTTCTACTTTGTGCAATGATGCCGATGAAGGAAAGAAGTTACTAAAAGCAGCCATGAATGCTCTTCTTACACTGCCTGTATCTGAAAACTCTGAAAGTATTCCGAGTGTCCAAAGTGACAGTGCAGACATAAAACCAATTGTGATCTGGAATGCATTTTATATTCAGAAATTAATTACGGTGTGCTTCTAA 1494 0.4438 MTEPQDPFSFSSYPPIDPINFDLIVIGTALSESVIAAAASAVGKTVLHLDPNSFYGSHFASLSLHDLTSYLTSPHHPPRAASGGDSDYFGVDLVHQHPCSDVEIAFCDDESESFLRENSRKFNIDLGGPRALFSADKAINLLMKSGASQYMEFKGIDESFVYEANEGLANVPDSRGAIFRDKKLSLKEKNQLMRFFKLVLKHLDDTQEEKISEEDLEIPFVSFLEKMKLPPKIKSILLYAIAMVDYDQDNNEVCKDLLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVISLLMEKVTGLYKGVRLASGQDLYSNQLILDPSFTVPSLPSLSRRDVLTERLQMLSQRDIKGMVARGICITKSSIKPDVSNCSVVYPPRSLYPEQVTSIKALQIGSNLAVCPAGTFILYFSTLCNDADEGKKLLKAAMNALLTLPVSENSESIPSVQSDSADIKPIVIWNAFYIQKLITVCF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01180 497 PRINTS Rab GDI/REP protein family signature 290 311 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 PRINTS Rab GDI/REP protein family signature 188 203 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 PRINTS Rab GDI/REP protein family signature 40 57 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 PRINTS Rab GDI/REP protein family signature 138 154 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 PRINTS Rab GDI/REP protein family signature 22 40 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 SUPERFAMILY FAD-linked reductases, C-terminal domain 376 490 - -
Cca06g01180 497 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 171 283 - -
Cca06g01180 497 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 97 466 - -
Cca06g01180 497 PIRSF Rab_ger_ger_transf_A_euk 11 97 IPR001738 GO:0005968|GO:0006886|GO:0018344
Cca06g01180 497 PIRSF Rab_ger_ger_transf_A_euk 101 495 IPR001738 GO:0005968|GO:0006886|GO:0018344
Cca06g01180 497 SUPERFAMILY FAD/NAD(P)-binding domain 18 358 IPR036188 -
Cca06g01180 497 Pfam GDP dissociation inhibitor 20 95 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 Pfam GDP dissociation inhibitor 117 456 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 17 492 - -
Cca06g01180 497 PANTHER RAB GDP-DISSOCIATION INHIBITOR 17 492 IPR018203 GO:0005092|GO:0007264
Cca06g01180 497 Gene3D - 18 376 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01180 Cca-Chr6 26197254 26204081 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01180 K23460 - gmx:100795946 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01180 06 26197254 26204081 Cca06g01180 06 26197254 26204081 ECH