Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01178 ATGTTCGTGAAGAAGCTCGTCGAGAAAGCATCCATAAAGAAGACTGCATCAGATGGGTTAAAAGGTAGTGATGTAGATCCATGTTTGGTATTTCATCAAGGGGTACCATCTGGTGGTACCAAGTTTGCCTATGACAATATTCAGAAGATACTGGCTCTTTCTACCAAGGATGGACGGATTAAACTATTTGGCAAAGATAATGCTCAAGTGCTGCTTGAATCTAAAGAGCCAGTGCCTAGCAAGTTTTTACAGTTCATTCAGAATGAAGGGATTCTCATAAATGTCACGTTCAATAACCATATTGAGGTTTGGGACATAGACAAGAAACTGTTGTCTGACGTGTACATTGTTAAAGAAGAAATCACCTGTTTTTCAGTCATTCAGCATAGCTTCTTTATGTATGTTGGACTTTCTAATGGCAATATTTCAGTTTTGTTGATTGATCCAAAACCATGGCATGTGTTACGGATGAAGTACACCATACCCCTTTCAGCTTCTTGTGGAAATTTAACTGAAGAATCTGATGATACTGTTGTGACACACATACTGCCTCAACCAGCAGCCGAGAGTCAAAGAGTTCTCATAATCTTTAGAAATGGTCAAATAATATTGTGGAATATTCGAGAAAGCAGATCCATTTTTAGAACTGGTGGAAGAATGTCACAAACACGTTATAATGAAACAAAGAAAGTATCCACTGCATGTTGGGTGTGTCCTTTTGGAAGTAAGGTGGTTGTAGGTTACAACAATGGAGAGCTTTTCATTTGGAGCATCCCTTCTCTAAACACCGGAAATAGTTTAGCAACTGATTATAGTAGTCAAAACACTCCTATGTTCAAATTTAACTTGGGGTATAAATCAGACAAAACTTCCATAGGATCAGTAAAATGGATTTATGCCGAAGGAAAGGCTAGCCGGCTATATGTCATGGGAGCTTCTGACTATTCCCCTTCAAACTCTTTGCAGGTAGTGTTGTTGAATGAACATACAGAATCTCGCACAATTAAGATGGGACTTAATTTGTCTGAATGCTGTATTGACATGGAGATCATATCAACCTCAAGCAAACATAGACAAAATTATTTCATATTGCTAGGGAAATCAGGCCATGTATATCTCTATGATGACAATTTGATTGAAAGATATTTACTGCAAAGCCAGTCGAACTCTAAGTCCACTACTTCACTGCCAAAGGAAGTGGTTGTGAAATTACCACTGGCAGATTCAAGCATCACGACAGCAAAATTCATCTCCAACAATCTCAATATGTTTAGTTCTGAAGATGAGTGTTACAGTCAGCTGCTCAAGAATTATCCACCGCTTATTCCCATTGAAACAAATCTGAAAGATGGGATTAACTTCAGTTCTGTAAATTTCACTGGATTTTCAAACGTTAAAAATTTGTACATAACTGGACACAGCAACGGAGCTGTAACATTTTGGGATGCGTCATGTTCCCTTTTCACCCCAATTTTGCAATTAAAGCAACAGAGTGAAAATGATTTTTCTTTAAGTGGCATACCCTTGACAGAATTATATTTTGATAGCAACTCTCCACTCCTTGTTTCTGGTGACCAAAGTGGGATGGTTCGTATCTATAGATTCAAACCTGAACCATATGCCTCCAACAGCTTCATGTCTCTTACTGGAGGTACAAAGAAAGGGACTGATGCAATCCACAGTATGAAACTTGTGAAGACTAGTGGTGCTGTAATTTGTATGCACTTAGATCACAGTTCAAGGCATCTTGCTGTTGGTTCTGACCAAGGAAATGTTTCAGTTATTGACTTAGATGGTCCATCTTTGTTATATCGAAAACATATTGCAAGTGAAATTGCCAGCGGTATCATCTCTCTGCAGTTCAAAACCTGCAGTTTGCATGGTTTTGAGAAAAATATTTTAGCAGTTGGAACAAAGGACTCATCTGTTCTAGCAATAGATGGTGAAACTGGAAACGCATTGAGCATCGGAACTGTTCATCCAAAGAAGCCCTCTAAAGCATTATTTATGCAGGTGTTGGATGGACAGGGAGAATCAATCACAGGATCAGTTACAAAAGATGGCCTAGACTTGAGAGAAGGGAATCGTATTGAAGATGCAACAGCAAAGCAATTTTACATTTTGCTGTGTTCTGAGAAGGCTTTGTATGTCTATTCTTTTGTGCATGCTTTACAGGGAGTAAAAAAGGTGCTTTACAAAAAGAAGTTTCATTCCTCTTCTTGTTGCTGGGCATCAACAATTTACGGTTCCTCTAATATTAGTCTCATACTCCTTTTTACCAGTGGAAAAGTAGAATTAAGGTCTTTGCCAGAGTTATCTCTGATCGTCGAGACTTCAATTAGAGGTTTCACGTACTCACCTCCAAAATTGAAGCCATTTTCTGATAGCCAGATATGTTGTTCATCCAAAGGGGAACTTGTTTTGGTGAATGGTGATCAGGAAATTTTTGTTCTCTCGTTGTTGGCCCAGAGGAATATATTCAGGCTTTTGGACTCTGCTAGCTGCATCTACAGGAAGGAAAGGATACCATCACAAGAAGAGCTTATTCCTGGCCCTGTCATCCATAAGGAAAAGAAAAAGGGTATATTCAGCTCCGTTATCAAAGATTTTACTGGCAGTAAAGAAAAGCACGTGCCCCTCATGGAAAAAGAAGATCCCAAAGAAAGTATACGGGAACTGTCAGCAATATTCTCAAATGCAAACTTTGCATGTAATGAAAATGATGATAAGCCAACGATGAATGACAATCAGCTTGAGTTAAACATAGATGACATTGACCTAGAGGACCACGGAGAAAAACGAAAAGAACAAAGCATATTAGGAGCTCTTAATAAGAAGAATTTGGCTGGCAAATTTCAGTCTCTGAAAGGAAGATTGAAAGAGATGAAGGGAAACAACCAAAAAACCTCAGATAAGGAAGTGCAACAGGACGAAAAAGATGGTTCGCTTGATCAAATTAAGAAGAAATACGGATTTTCTTCTTCCGCCAATGACTCAACCGTTGCTAAACAGGCACAAATCAGGCTGCATGAAAACACAAGGAAATTGGAGGGTATCAACCTTCGTGCCACAGAGATGCAAGTTAAAGCAAAATCATTTTCATCATTGGCAAAACAAGTGCTGCGAACTGCTGAGCAGGATAGACGAAGTTGA 3153 0.3892 MFVKKLVEKASIKKTASDGLKGSDVDPCLVFHQGVPSGGTKFAYDNIQKILALSTKDGRIKLFGKDNAQVLLESKEPVPSKFLQFIQNEGILINVTFNNHIEVWDIDKKLLSDVYIVKEEITCFSVIQHSFFMYVGLSNGNISVLLIDPKPWHVLRMKYTIPLSASCGNLTEESDDTVVTHILPQPAAESQRVLIIFRNGQIILWNIRESRSIFRTGGRMSQTRYNETKKVSTACWVCPFGSKVVVGYNNGELFIWSIPSLNTGNSLATDYSSQNTPMFKFNLGYKSDKTSIGSVKWIYAEGKASRLYVMGASDYSPSNSLQVVLLNEHTESRTIKMGLNLSECCIDMEIISTSSKHRQNYFILLGKSGHVYLYDDNLIERYLLQSQSNSKSTTSLPKEVVVKLPLADSSITTAKFISNNLNMFSSEDECYSQLLKNYPPLIPIETNLKDGINFSSVNFTGFSNVKNLYITGHSNGAVTFWDASCSLFTPILQLKQQSENDFSLSGIPLTELYFDSNSPLLVSGDQSGMVRIYRFKPEPYASNSFMSLTGGTKKGTDAIHSMKLVKTSGAVICMHLDHSSRHLAVGSDQGNVSVIDLDGPSLLYRKHIASEIASGIISLQFKTCSLHGFEKNILAVGTKDSSVLAIDGETGNALSIGTVHPKKPSKALFMQVLDGQGESITGSVTKDGLDLREGNRIEDATAKQFYILLCSEKALYVYSFVHALQGVKKVLYKKKFHSSSCCWASTIYGSSNISLILLFTSGKVELRSLPELSLIVETSIRGFTYSPPKLKPFSDSQICCSSKGELVLVNGDQEIFVLSLLAQRNIFRLLDSASCIYRKERIPSQEELIPGPVIHKEKKKGIFSSVIKDFTGSKEKHVPLMEKEDPKESIRELSAIFSNANFACNENDDKPTMNDNQLELNIDDIDLEDHGEKRKEQSILGALNKKNLAGKFQSLKGRLKEMKGNNQKTSDKEVQQDEKDGSLDQIKKKYGFSSSANDSTVAKQAQIRLHENTRKLEGINLRATEMQVKAKSFSSLAKQVLRTAEQDRRS 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01178 1050 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1049 - -
Cca06g01178 1050 SMART WD40_4 561 596 IPR001680 GO:0005515
Cca06g01178 1050 SMART WD40_4 447 482 IPR001680 GO:0005515
Cca06g01178 1050 SMART WD40_4 495 534 IPR001680 GO:0005515
Cca06g01178 1050 SMART WD40_4 217 257 IPR001680 GO:0005515
Cca06g01178 1050 CDD R-SNARE_STXBP5_6 985 1042 - -
Cca06g01178 1050 Gene3D - 40 434 IPR015943 GO:0005515
Cca06g01178 1050 Gene3D - 442 672 IPR015943 GO:0005515
Cca06g01178 1050 Pfam Lethal giant larvae(Lgl) like, C-terminal 726 843 IPR013905 -
Cca06g01178 1050 SUPERFAMILY WD40 repeat-like 510 808 IPR036322 GO:0005515
Cca06g01178 1050 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1049 - -
Cca06g01178 1050 SUPERFAMILY WD40 repeat-like 40 596 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01178 Cca-Chr6 26179685 26191126 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01178 - - gmx:100782049 1829.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01178 06 26179685 26191126 Cca06g01178 06 26179685 26191126 ECH