Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01175 ATGGCGAGCATAAAGCCTTTGCCGGAGGCTGTTCGTAGCTCACTGCGTTCTGGCATTTTCCTGTTCGACTTCACTCGTGTCGTCGAGGAACTGATTTTCAATAGCCTCGATGCTCGTGCTACAAAGGTATCGGTGTTTGTGAGTACTGGGAGCTGCTATTTGAAAGTAGTTGACGATGGAAGTGGAATTACTCGAGATGGGCTGCAATTGGTGGGAGAAAGATATGCAACATCAAAATTTCTTAATTTAGTTGATCTGAATGCTGTGAGTGAGAACTTTGGTTATCACGGGGAAGCTTTAGCTTCCATTTCTGAAGTCTCTTTGCTGGAGATTGTCACAAGAACATTTGGAAGGCCAAATGGATATCGAAAAGTGTTGAAGGGGTGCAAGTGTTTATATCTTGGTATTGATGATGATAGAAAAGAAGTGGGCACCACAGTTGTTGTCCGTGATTTATTTTACAACCAACCAGTTCGGAGAAAATACATGCAATCCAGCCCCAATAAGGTTCTGCAATCAATCAAGAAATGTGTAATGCGACTTGCACTTGTGCGTCCAAATATTTCCTACAAAGTGGTTGATATTGAAAGAGGGGATGAGCTCTTTTGCACACATTCTGCTTCTTCTCCTCTACCGCTTATAACCAGTGGCTTTGGGGTAGAGGTCACTAGCTCTCTTCTCAATTTAGAAGTTGAGAATGATATTATAAAGCTTTCTGGATACCTATCTAGTCCTTGCAATACTTTGAATGCGAAGGCCTTGCAGTATGTATATGTTAACTCACAATTCGTTTGCAATGGCCCAATTCATAAACTTCTGAGTCAACTGGCTATTAGCTTTGAGCATATGAACTCATGGAATGCTGATAATGAGTTCCGAAACAAGAAGAGAACCAGGTCTCAACCATGTCCAGCTTATCTCTTGAATTTAAGTTGCCCCCGGTCTTTGTATGATTTGGCCTTTGAACCATCAAAAACTTATGTTATATTCAAGGATTGGACTCCTGTCCTAAACTTCATTGAGAAGGCCATCAAAAAATTCTGGGAAGAAAACATAGCTTGTGTAGAGCCCTCCATTCAAGCCGCTTACATGGTAGAAGATCAACAAGAGAAAGCAGATGTCAACATCATTTCAGCAGTGTCAGATATATCAAAGTTTAGAAACCAAAATCGTAAGGATTGCCAAGACCTCTTCTTTTCCACTTCAGACAAGATAATTCAAGATGACCATCATCAATCCAACAGGGAAGATGCTAGAACCTCCTTTGATTGCTTACATCAAGGGGCCATGATGTTCAAAGAGCAACAAAGTAAGGGAGACTTTCTTTTTCAGACTGGTTATTCTGGCAACTTATTAGATGGCTCATATGCCAAGTGCATGTCCACTGTGATGAGAAAACATAACAGTTTGATGTTGTATGATAACAATAGTTTATTGGAAAGAGATAACTTTTTTGATGCTGAAATCCCCACAGTAGAAAGTTTTTATGATAATGTACCTTTTGAAGCACCGAGTTCTTCACATGGAAGAAAATTCCATAAAGTAGAAGCTGATGTGGTCAATGAATCATTTGAAGACGATTTACTTAATAACTGCAATGGGTACAGTTATGATGTAAAAATTAGTGGGGATTTGCAAAAGCCTTTTCTAAAGAGATGCTCTACACTAGGAAGTATCCTGCATGAGAAGGCTTTGCTTGTAAATGATGAACATGAACTCCAAACTGATAGCTTTTGGAGCAAGCAGAATATTGGGGAAGATTATAGATGTGGTAAGGATTTATATGCCCATCCCTATCCAGAAGTCACAAAAAAGTTGAAGATGTCTAAAGATTCTGGTTTTCTCTTAAGAGTGTTGGCTGAAGAAAATTGTCTCCCTCCAGATTCCTGCGGTTCAGCAGCACAAATAGGAAGCACTGGGTCAGATGATCAGTTATTAAATTTTGAATGGTATCCTGTCTACCAAAAACCCTCATCTCAAGCATCTGCATCGGGTGTTTATCATACAACTGATATTAAAGATGATCTCGGACAAGTATCTAGATACTATAAAAGGATCCATGGTACAAAACGTTTTGGTGACAGAGAAGACAAGTGCAATTTCAACTACAATATGTCAAGGAATACCAATCAACATCACTGTTCATCAAGTTTTGCAAATAGTGGACTTAATTTTGATATTGCTGGTGATTGTGGTGAAATATTCAACAGACTAGTTGACTGGCCTGATTTCAGTGATATACATTCTACGAAATGGTCAGATATTTCAAAGGAGGAGGCAGACTGGCTGTTGCCTGGGTCATGTGTTAAAAGCTGCCAGAGACCTAACAAAAACAAAGGCAAAAGGGATCAATTTAGAAATCCAGCTTTGGAGGAGAATCTTGAAAGATCTAGAAGAAGCTTTTCAGCTCCTCCTTTTCATAGAAGCAAAAGGAGATTTTTCTCTTTAAATCATCCTTCAGAAATTATAGCCCAAAGACAGATTGGCCAAATATCAAAACCTGCTTTCAATCATCGAGAAGCTAGTGATTTTAAATATCCTCTACAGTCTCCCGTTGCTCTTCACCAAAGCACTAAAGATCTCTCACTGCCAGAATTCAAAACTGATGTGAAGCAGACTTCAGAGGTTCAGGGAGATATGCAGTTTAATGACATTTCAGAGATTGATGGATTTGAATGTTTCAAAATTCAAAACAGTGCTCCATTTGGGGAATTGATCTCTAAGAACGTGCAAGATTCCATAGATTACGGGACTAAATGGAGGAACTCCTCACCCAAAATTACAAAGAATGATAAATTGGCTAATATTCAAAGTCAAAACAAAATACTTGACATTTCTTCTGGATTCTTGCATCTTGCTGGAGATTTGTTAATTCCTGAAACTATCAGTAAGAAATGCCTTGAGGATGCTAAAGTTCTGCATCAGTTGGATAAAAAATTCATTCCAGTCGTGGCTGGCCGAACCCTTGCTGTTATTGATCAGCATGCTGCTGATGAAAGAATCAGACTGGAAGAATTGCGACAAAAGGTATTGTCAGGAGAAGCAAAAACAATAACCTATCTAGATGCTGAACAGGAACTGGTACTGCCAGAAATTGGTTATCAACTACTTCATAGTTACAGTGAACAGATTAAAGATTGGGGCTGGATCTGCAACATTCATGCTCAAAATTCTGAATCCTTTAGAAGGAATTTGGATATTTTCAACAGACCACAGATGGCCATCACACTTGTTGCGGTACCATGTATTTTAGGGGTCAAATTAAATGATGTTGATCTTCAAGAATTTCTTCAGCAGCTTGCTGACACTGATGGATCATCAACAATGCCTCCCTCTGTCTTACGAGTGCTAAATTTAAAAGCATGCAGAGGTGCAATTATGTTTGGTGATTCGTTGCTACCATCAGAATGCTCCCTTCTAATTGAAGAGCTAAAGCAAACATCACTTTGTTTTCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTAGTCAACTTGGACTCACTGCATAGTCAGATTGCCAAGCTTCGACTGATGAACGAATGTTCAAGTGACGAGTGGCATGGATTACATAAACATAAAGTGAATGTTGAACGTGCTACATGGCGTTTAAATTCTTCTAGAGGAATTTGA 3633 0.3922 MASIKPLPEAVRSSLRSGIFLFDFTRVVEELIFNSLDARATKVSVFVSTGSCYLKVVDDGSGITRDGLQLVGERYATSKFLNLVDLNAVSENFGYHGEALASISEVSLLEIVTRTFGRPNGYRKVLKGCKCLYLGIDDDRKEVGTTVVVRDLFYNQPVRRKYMQSSPNKVLQSIKKCVMRLALVRPNISYKVVDIERGDELFCTHSASSPLPLITSGFGVEVTSSLLNLEVENDIIKLSGYLSSPCNTLNAKALQYVYVNSQFVCNGPIHKLLSQLAISFEHMNSWNADNEFRNKKRTRSQPCPAYLLNLSCPRSLYDLAFEPSKTYVIFKDWTPVLNFIEKAIKKFWEENIACVEPSIQAAYMVEDQQEKADVNIISAVSDISKFRNQNRKDCQDLFFSTSDKIIQDDHHQSNREDARTSFDCLHQGAMMFKEQQSKGDFLFQTGYSGNLLDGSYAKCMSTVMRKHNSLMLYDNNSLLERDNFFDAEIPTVESFYDNVPFEAPSSSHGRKFHKVEADVVNESFEDDLLNNCNGYSYDVKISGDLQKPFLKRCSTLGSILHEKALLVNDEHELQTDSFWSKQNIGEDYRCGKDLYAHPYPEVTKKLKMSKDSGFLLRVLAEENCLPPDSCGSAAQIGSTGSDDQLLNFEWYPVYQKPSSQASASGVYHTTDIKDDLGQVSRYYKRIHGTKRFGDREDKCNFNYNMSRNTNQHHCSSSFANSGLNFDIAGDCGEIFNRLVDWPDFSDIHSTKWSDISKEEADWLLPGSCVKSCQRPNKNKGKRDQFRNPALEENLERSRRSFSAPPFHRSKRRFFSLNHPSEIIAQRQIGQISKPAFNHREASDFKYPLQSPVALHQSTKDLSLPEFKTDVKQTSEVQGDMQFNDISEIDGFECFKIQNSAPFGELISKNVQDSIDYGTKWRNSSPKITKNDKLANIQSQNKILDISSGFLHLAGDLLIPETISKKCLEDAKVLHQLDKKFIPVVAGRTLAVIDQHAADERIRLEELRQKVLSGEAKTITYLDAEQELVLPEIGYQLLHSYSEQIKDWGWICNIHAQNSESFRRNLDIFNRPQMAITLVAVPCILGVKLNDVDLQEFLQQLADTDGSSTMPPSVLRVLNLKACRGAIMFGDSLLPSECSLLIEELKQTSLCFQCAHGRPTTVPLVNLDSLHSQIAKLRLMNECSSDEWHGLHKHKVNVERATWRLNSSRGI 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01175 1210 Pfam DNA mismatch repair protein, C-terminal domain 216 347 IPR013507 GO:0005524|GO:0006298|GO:0030983
Cca06g01175 1210 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 1 1169 IPR028830 GO:0006298
Cca06g01175 1210 SUPERFAMILY Ribosomal protein S5 domain 2-like 197 349 IPR020568 -
Cca06g01175 1210 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 117 - -
Cca06g01175 1210 SUPERFAMILY DNA mismatch repair protein MutL 970 1163 IPR037198 -
Cca06g01175 1210 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 200 IPR036890 -
Cca06g01175 1210 SMART MutL_C_2 972 1132 IPR014790 GO:0005524|GO:0006298
Cca06g01175 1210 Gene3D - 1016 1127 IPR042121 -
Cca06g01175 1210 Gene3D - 2 206 IPR036890 -
Cca06g01175 1210 Gene3D - 219 355 IPR014721 -
Cca06g01175 1210 SMART DNA_mis_repair_2 214 349 IPR013507 GO:0005524|GO:0006298|GO:0030983
Cca06g01175 1210 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 1 1169 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Cca06g01175 1210 CDD MutL_Trans 214 348 - -
Cca06g01175 1210 MobiDBLite consensus disorder prediction 773 801 - -
Cca06g01175 1210 Pfam MutL C terminal dimerisation domain 971 1132 IPR014790 GO:0005524|GO:0006298
Cca06g01175 1210 Gene3D - 975 1163 IPR042120 -
Cca06g01175 1210 MobiDBLite consensus disorder prediction 776 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01175 Cca-Chr6 26136538 26147522 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01175 K08739 - gmx:100788019 2064.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01175 06 26136538 26147522 Cca06g01175 06 26136538 26147522 ECH