Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01142 ATGGTTCTCATCACTGCACCATTGCCAACAGTACCAACCCACCACGTATTCTTCGACGAAAACGTGGATTTCAACAACAAATACCCACGTACTTTGCCTCCTCCCAACCATCAACTCGAGCTTCGACTACCCCTGCGCCGCACCATTCACAACTTCCCTAATCACACTTTCCCACAACCCCTTACTCCCAAAACAACCACTTTAACAAAGAAGAAAAAGAAGAGAAAAGGGGCTGCAACCTCTGACATATTGCACTTAATGGACGCTCTACCCTTTCCCATATCCATTGATATCTACACCTCTTTGATAAAAGAGTGCACCGTTTCCGCCGACCCAGAAACCGCAATTGAGTTGTACACGCACATCGCCAAGAGCGGCATCAGACCCCCCTTGTCTTTCCTCAACCGGATTCTCATCATGTTCGTGTCCTGTGGTCTGTTGGAAGATGCACGCCACCTGTTCGACAAAATGCGTGTGAGGGACTTCAACTCTTGGGCAACCTTGTTTGTTGCGTACTATGATAATGCCGATTACGAGGAGGCTACGGATGTTTTTGTCAACATGTTGGGCCAGTTGGGTATGCTGCAATTTCCTCCGTGGATATGGGCTTGCCTTCTCAGGGCCTGTGCCTGCACTGTGAATGTCCCTCTGGGAATGCAAGTTCATGGGTGGTTGTTGAAGTTGGGGTCTTGTGATCACGTGCTTCTCAGCAGCTCCTTGATCAACTTCTACGGGAGATTCACGAGCCTGGAAGATGCGAGTGTTGTCTTCAATGGGGTGTCTCGGCATAGCACTTTGACTTGGACGGCTAAAATTGTTAGTGGTTGCAGGGAAAGGCATTTCTCTGAGGCTTTTGGCGACTTCAAGGAGATGGGAAAGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTCAAGGCGTGTGGCAAGATGCTGAATCAGGAACGGTGTGGTGAGCAGGTTCATGCTGATGCTATCAAACTTGGGCTGGTCTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTGTGGCAGATGTGGGTTATTGAGAGAAGCAAAACGGGTGTTTGAGATGAGCCGTGAGGAGAGAAAGGATGATTGTTGGAATGCTATGCTTATGGGTTACATACAGAATGGTTTGTATATTGAAGCTGTTAAGTTTCTGTATCAGATGAGGGCTGCTGGAATGCAGCCCCAGCAATCCCTGCTTAATAGATTAAGAATTGCTTGTGGAAGTATTACTTACTCAAACATGAATTAA 1269 0.476 MVLITAPLPTVPTHHVFFDENVDFNNKYPRTLPPPNHQLELRLPLRRTIHNFPNHTFPQPLTPKTTTLTKKKKKRKGAATSDILHLMDALPFPISIDIYTSLIKECTVSADPETAIELYTHIAKSGIRPPLSFLNRILIMFVSCGLLEDARHLFDKMRVRDFNSWATLFVAYYDNADYEEATDVFVNMLGQLGMLQFPPWIWACLLRACACTVNVPLGMQVHGWLLKLGSCDHVLLSSSLINFYGRFTSLEDASVVFNGVSRHSTLTWTAKIVSGCRERHFSEAFGDFKEMGKRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMCGRCGLLREAKRVFEMSREERKDDCWNAMLMGYIQNGLYIEAVKFLYQMRAAGMQPQQSLLNRLRIACGSITYSNMN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01142 422 PANTHER OS07G0578800 PROTEIN-RELATED 69 416 IPR045215 GO:0003723|GO:0009451
Cca06g01142 422 Gene3D Tetratricopeptide repeat domain 67 210 IPR011990 GO:0005515
Cca06g01142 422 Gene3D Tetratricopeptide repeat domain 269 420 IPR011990 GO:0005515
Cca06g01142 422 Pfam PPR repeat family 265 311 IPR002885 -
Cca06g01142 422 TIGRFAM PPR: pentatricopeptide repeat domain 370 401 IPR002885 -
Cca06g01142 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Cca06g01142 422 Pfam PPR repeat 341 364 IPR002885 -
Cca06g01142 422 Pfam PPR repeat 370 398 IPR002885 -
Cca06g01142 422 Pfam PPR repeat 137 161 IPR002885 -
Cca06g01142 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Cca06g01142 422 PANTHER PPR REPEAT PROTEIN 69 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01142 Cca-Chr6 25697118 25698386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01142 76 417 Glycoside Hydrolase AT3G49170 28.895 7.30e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01142 - - gmx:100778405 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01142 06 25697118 25698386 Cca06g01142 06 25697118 25698386 ECH