Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01141 ATGGTCCCAAAGCCCATCATAGTGACAAGCCAACCAACCTCTTCCACCTCTCCCCCACTCCCTCTCCTCAATGCAACAACCGTTAGAACCGAAGAAAAACCCCAAACCCAAAGTCAAAGCATAAGAAGCACTCCTCCACCCGCACCCGCTCCGACCATCAAAACGACACGCGTTGAGGCAAAAAGAAAAAGCGAGCCATGGGTGCCGGCGCTGATGCTAAACGCATTCGACGACATAATCAACAACTTCATAGACCCTCCCCTCAAACCCTCCGTCGATCCAAGACGCGTCCTAACGCAGAACTTCGCCCCCGTCCACGAACTCCCTCCGACGCCGTGCGAGGTCGTCCAAGGCTCCCTCCCGCCGTGCCTCGACGGCGCCTACATCAGAAACGGCCCCAACCCCCAATTCCTCCCCCGCGGACCCTACCACCTCTTCGACGGCGACGGCATGCTCCACGCCCTTCGCATTTCCCAAGGCAAACCCACTCTCTGCAGCCGCTACGTCAAAACCTATAAGTACAAAGTCGAAAACGACGCCGGATTTCCTCTCTTCCCCAATGTTTTCTCCGGCTTCAACTCCCTCGCTGCCTCCGCCGCGCGCGGCTCTCTCACGGCGGCGCGAGTCCTCGCCGGACAGTACAACCCAGCCAACGGCATTGGCTTGGCCAACACCAGCCTGGCCTTCTTCGCCAACCGTCTCTTCGCGCTGGGAGAGTCCGATCTCCCTTACGCCGTTAACATAACCGCTAACGGCGACGTTGAAACAGTTGGCCGTTACGACTTCGAGGGGAAATTGGCGTTTAGCATGACGGCGCACCCTAAGATAGACCCCGACACAGGGGAATGCTTCGCCTTCCGTTACGGCCCCGTGCCACCGTTTCTCACCTACTTCCGCTTCGACCCTAACGGAAGAAAACACCCCGACGTCCCTATTTTCTCCGTTCTTTCACCTTCGTTCCTCCACGACTTCGCCATCACCAAGAACTACGCCATTTTCTGCGACATCCAGCTCGGAATGAACCCTATTGACATGCTTCTTTACGGTGGCTCCCCCTTGGGATCCGTGCCTTCCAAGGTCCCCAGGATCGGAATCCTTCCTCGTGATGCTAAGGATGAATCAATGATAAAGTGGTTGGAGGTGCCGGGGTTTAACATCATGCACGCGATCAACGCGTGGGACGAGGACGATGGAAGAACGGTGGTTCTGGTGGCGCCGAATATTCTTTCGCTGGAACACGCCATGGAGAGAATGGAGCTGGTTCACGCGGTGGTGGAGAAGGTGCGGATCAATCTGGAGACGGGGATCGTGACGCGGCAACCTCTGTCGGCGAGGAACCTGGACTTCGCGGTGATAAACCCCGCCTACGTGGGAAAGAAGAACCGGTTCGTTTACGCGGCGGTGGGGGACCCAATGCCCAAGATTTCGGGGGTGGTGAAGCTGGACGTGTCGTCCAAGGGGGAGGATTCTGTGGTCGGCTGCAGGATGTACGGCGACGGTTGCTACGGCGGAGAGCCCTTCTTTGTGGCCAGGGAGGAAGCGGTGGAGGAGGACGACGGATACTTGGTCAGCTACGTCCACGATGAGAGGAGCGGAGAGTCCAAGTTTGTTGTGATGGATGCCAAGTCGCCGGAGCTGGAGGTGGTGGCGGCGGTGAGGCTTCCGCGGCGGGTTCCTTACGGTTTTCATGGGCTGTTTGTGAAGGAAAGTGAGCTGAGGAAGGTGTCACTGTCGTTGTCGTGA 1743 0.5789 MVPKPIIVTSQPTSSTSPPLPLLNATTVRTEEKPQTQSQSIRSTPPPAPAPTIKTTRVEAKRKSEPWVPALMLNAFDDIINNFIDPPLKPSVDPRRVLTQNFAPVHELPPTPCEVVQGSLPPCLDGAYIRNGPNPQFLPRGPYHLFDGDGMLHALRISQGKPTLCSRYVKTYKYKVENDAGFPLFPNVFSGFNSLAASAARGSLTAARVLAGQYNPANGIGLANTSLAFFANRLFALGESDLPYAVNITANGDVETVGRYDFEGKLAFSMTAHPKIDPDTGECFAFRYGPVPPFLTYFRFDPNGRKHPDVPIFSVLSPSFLHDFAITKNYAIFCDIQLGMNPIDMLLYGGSPLGSVPSKVPRIGILPRDAKDESMIKWLEVPGFNIMHAINAWDEDDGRTVVLVAPNILSLEHAMERMELVHAVVEKVRINLETGIVTRQPLSARNLDFAVINPAYVGKKNRFVYAAVGDPMPKISGVVKLDVSSKGEDSVVGCRMYGDGCYGGEPFFVAREEAVEEDDGYLVSYVHDERSGESKFVVMDAKSPELEVVAAVRLPRRVPYGFHGLFVKESELRKVSLSLS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01141 580 Pfam Retinal pigment epithelial membrane protein 102 568 IPR004294 GO:0016702
Cca06g01141 580 PANTHER BETA-CAROTENE DIOXYGENASE 21 574 IPR004294 GO:0016702
Cca06g01141 580 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 21 574 - -
Cca06g01141 580 MobiDBLite consensus disorder prediction 7 43 - -
Cca06g01141 580 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01141 Cca-Chr6 25680809 25682629 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01141 K09840 - gmx:100777875 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01141 06 25680809 25682629 Cca06g01141 06 25680809 25682629 ECH