Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01133 ATGGCACCTGCTAGGGTTTTCGGAGCGAGCGCCGGAAGAGCCTTCATGGCGGCGGCGGCGAAGAGCGCGGCCAAGAAAGCCGCCCCGTCCGGGGGCGCCGCCGCGAAAGCCGCGCCGAAGAAGACGTCCCCGACGAGAACCATCTCTGGCATACAGAAGGTGGTTCCGGTCTCTTCCGAGCTCGGCCACTTCCTCGGCGCTCCTCAAGTGTCGCGAACCGACGCCGTCAAAAGAGTCTGGGAATACATCAAGCTGCAAAATCTTCAGAATCCTTCAAATAAGAAGGAGATCTTCTGTGATGCAAAGCTGAAGACCATTTTTGATGGGAAAGATAAGGTTGGGTTCACCGAGATTGCTAGATTGCTGTCTAACCATTTTGTGAAATCAGGATGA 393 0.5547 MAPARVFGASAGRAFMAAAAKSAAKKAAPSGGAAAKAAPKKTSPTRTISGIQKVVPVSSELGHFLGAPQVSRTDAVKRVWEYIKLQNLQNPSNKKEIFCDAKLKTIFDGKDKVGFTEIARLLSNHFVKSG 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01133 130 SMART swib_2 51 130 IPR019835 -
Cca06g01133 130 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 4 129 - -
Cca06g01133 130 MobiDBLite consensus disorder prediction 27 47 - -
Cca06g01133 130 SUPERFAMILY SWIB/MDM2 domain 46 128 IPR036885 -
Cca06g01133 130 Pfam SWIB/MDM2 domain 55 126 IPR003121 -
Cca06g01133 130 Gene3D SWIB/MDM2 domain 45 130 IPR036885 -
Cca06g01133 130 CDD SWIB-MDM2_like 55 126 - -
Cca06g01133 130 ProSiteProfiles SWIB/MDM2 domain profile. 50 128 IPR003121 -
Cca06g01133 130 PANTHER PROTEIN TRI1 4 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01133 Cca-Chr6 25583577 25585305 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Cca06g01133 SWIB 4.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01133 - - gmx:100779127 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01133 06 25583577 25585305 Cca06g01133 06 25583577 25585305 ECH