Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01128 ATGAGAACATGGGTAGTTTTCCGATTGCCGCTGAAGCACGTAACAAGTTTGGCCAATGAAAATTTACCCTTTCTAGGACCAAGAATATCACCATCCTCCCATTCAATTTCTTCACATAACTACCAAAGTTGGAACTTCAGTATTGCTAGGCGACAAAGGGTTCCAATTGATCCACATGCACCTGCCTTGTTATCATGTTGCCATCGTTTTTGCAGCGCCATTCAGATGTTTGAGGAAATGCCACAAAGACCTCTACAATTGAGAGATATTCATTTTGAGCTTGTTGATTACATCAAATCGTGCCTCAAAAGACCCAAAATTGTGACTGCAACTGTTGCCCATTGTGCAGCTTTAAAGATTGGTGCTCTAGCTCATCTCCCAACTTCAACATCTCTACTCACTGTTTATTCCAAGGCTGGAGACTTTACCTCTTCAAAGGATTTGTTTGATGAAGTTCACAGTAGAGATGTGATTGCTTGGAATGCTATTGTTGCAGCATGTCTTACAAATAACTGCTATAGAACAGCAATGGACTTCTTAGAGAAAATGATAAAGGCGCAAACTGGATTTGATTCCACTACTCTGATGCTTATGGTATCAGCTTCGTTACACATCAAAAGCTTTCATCAAGGAAGGGCAATTCATTGTGTGAGTGTAAAATCTGGGAGGCTTGTGGATATCAATTTAGGTAATGCTCTTATTGACATGTATGCTAAGTGCGGTGATCTAAACTCTTCAGAGTGTCTATATGAAGAGATGGAAGGTAAAGATGTCGTTTCATGGAATTCAATAATGAGAGGTAGTCTTTACAATAATGATCCAGAGAAAGCGTTGTATTACTTCAAAAGGATGGCTTTTTCAGAAGAAACAGCAGACAATGTCAGTCTATCTTGTGCTATTTCTGCATCTTCGAGTTTGGGAGAGCTGGCTTTAGGCCAGTCCATTCATGGGCTGGGAATCAAGCTAGGATACAAGGACAGCTCACATGTTTCAGTTGCTAATTCCCTCATTTCATTATATTCACAATGTGAAGACATCAAGGCTGCTGAACGAGTGTACAGAGAAATAGCACTTAAAGATATTGTTTCCTGGAATGCAATGATGGAAGGATTTGCTTCAAATGGAAAGATTAATGAAGTGTTTGATCTTCTGGTTGAAATGCAAATAGTAGGGTCTTTCCAACCTGATATAGTGACATTAACTATCATACTTCCGCTTTGTGCAGAACTGATGCTCTCTAGAGAAGGAAGAGCTATCCATGGATTTGCAATTCAAAGACAGATGGTATCCGGTCATGTTATGTTACTGAACAGCCTGATAGACATGTATTCAAAGTGCAACCTTGTGGAGAAAGCCGAGCTCTTGTTCAATTCCTCTGTTGAGAAAGACTCAGTCTCATGGAATGCAATGATATCTGGCTATTCTCTCAACATGTATTCTAATAAAGCTCAAAATTTGTTCAGAGAGATGCTACGTTGGGGCCCAAATTGCAGCTCAGCAACCGTTTATGCTATTCTTGCTTCTTGCAACTCCCTTTATAGTCTCCACTTTGGAAAATCAGTTCACTGCTGGCAGTTGAAATCTGGGTTTTTGAACCACATTCTTTTAATAAATTTTCTCATGCACATGTATATCAATTGTGGAGACTTGGCAGCCAGTTTCTCAATTTTGCATGAGAATTCTGCTTTAGCAGATATAGCTTCATGGAACACACTAATTGTAGGGTGTGTAAGATGTGACCGTTTTAGAGAGGCTCTAGAGACTTTCAAGTTGATGAGACATGAACCTCCTTTCAACTTTGACTCCATAACCCTTGTAAGTGTCGTGTCTGCCTGTGCAAACCTGGAACTATTCAACCTAGGAAAGTCTCTCCATGGCCTTGCACTTAAGTCTCCTTTGGAATCAGATACTCGGGTTCAGAACTCGCTAATTACCATGTACGACAGATGCAGGGACATCAACAGTGCTAGATTAGTGTTTAAATTCTGCTCTAGTCCTAATCTATGCTCATGGAATTGTATGATCTCAGCTTTATCTCATAATAGAGAAAGTAGAGAAGCACTGGAACTATTTCGCCATCTTCGGTTTGAACCGAATGAGATCACCATTGTTTGTGTTCTCTCAGCTTGCACTCAAATCAGCGTCCTAAGACTCGGAAAACAAGTTCATGCCCGCGTGTTCAGGGCTGGCATTCAAGATGATTCTTTCATATCAGCAGCTCTTATAGATTTGTATAGCAACTGTGGAAGATTGGACACTGCCCTCCAAGTATTCAGACATTCAGAGGAAAAGTCAGAATCAGGTTGGAATTCAATGATCTCTGCATGTGGATATCATGGAAATGGTGAGAAAGCAATCAAAATCTTCCATGAAATGTGCAAGTCAGGAGCAAGGGTGAGCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGCCATTCAGGACTTGTGAGCCAAGGTCTTTGTTACTATGAGTGTATGTTAGAGAAATATGGAGTGCAACCTGAGACTGAGCATCAAGTTTATGTGGTTGACATGCTAGGTAGATCAGGTAGACTGGATGAGGCTTACGAGTTTGCAAAGGGGTGTGACAGATCAGGTGTATGGGGAACTCTCCTAAGTGCTTGCAACTATCATGGAGAACTCAAGTTGGGGAGACAAATTGCTCAACGTCTCTTTCAACTGGAACCTCAAAATGTTGGATATTACATATCTTTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCAACTGACTTAAGACAATATATCGAGGACTTGGGATTAAGAAAAAACGCAGGATATAGTCTTATTGATGTTGGTTTTTGA 2835 0.4053 MRTWVVFRLPLKHVTSLANENLPFLGPRISPSSHSISSHNYQSWNFSIARRQRVPIDPHAPALLSCCHRFCSAIQMFEEMPQRPLQLRDIHFELVDYIKSCLKRPKIVTATVAHCAALKIGALAHLPTSTSLLTVYSKAGDFTSSKDLFDEVHSRDVIAWNAIVAACLTNNCYRTAMDFLEKMIKAQTGFDSTTLMLMVSASLHIKSFHQGRAIHCVSVKSGRLVDINLGNALIDMYAKCGDLNSSECLYEEMEGKDVVSWNSIMRGSLYNNDPEKALYYFKRMAFSEETADNVSLSCAISASSSLGELALGQSIHGLGIKLGYKDSSHVSVANSLISLYSQCEDIKAAERVYREIALKDIVSWNAMMEGFASNGKINEVFDLLVEMQIVGSFQPDIVTLTIILPLCAELMLSREGRAIHGFAIQRQMVSGHVMLLNSLIDMYSKCNLVEKAELLFNSSVEKDSVSWNAMISGYSLNMYSNKAQNLFREMLRWGPNCSSATVYAILASCNSLYSLHFGKSVHCWQLKSGFLNHILLINFLMHMYINCGDLAASFSILHENSALADIASWNTLIVGCVRCDRFREALETFKLMRHEPPFNFDSITLVSVVSACANLELFNLGKSLHGLALKSPLESDTRVQNSLITMYDRCRDINSARLVFKFCSSPNLCSWNCMISALSHNRESREALELFRHLRFEPNEITIVCVLSACTQISVLRLGKQVHARVFRAGIQDDSFISAALIDLYSNCGRLDTALQVFRHSEEKSESGWNSMISACGYHGNGEKAIKIFHEMCKSGARVSKSTFVSLLSACSHSGLVSQGLCYYECMLEKYGVQPETEHQVYVVDMLGRSGRLDEAYEFAKGCDRSGVWGTLLSACNYHGELKLGRQIAQRLFQLEPQNVGYYISLSNMYVAAGSWKDATDLRQYIEDLGLRKNAGYSLIDVGF 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01128 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Cca06g01128 944 PANTHER OS01G0913400 PROTEIN-RELATED 403 675 - -
Cca06g01128 944 PANTHER OS01G0913400 PROTEIN-RELATED 619 942 - -
Cca06g01128 944 PANTHER OS01G0913400 PROTEIN-RELATED 70 399 - -
Cca06g01128 944 PANTHER OS01G0913400 PROTEIN-RELATED 190 491 - -
Cca06g01128 944 TIGRFAM PPR: pentatricopeptide repeat domain 670 695 IPR002885 -
Cca06g01128 944 TIGRFAM PPR: pentatricopeptide repeat domain 769 796 IPR002885 -
Cca06g01128 944 TIGRFAM PPR: pentatricopeptide repeat domain 568 594 IPR002885 -
Cca06g01128 944 TIGRFAM PPR: pentatricopeptide repeat domain 362 396 IPR002885 -
Cca06g01128 944 Pfam PPR repeat family 359 405 IPR002885 -
Cca06g01128 944 Pfam PPR repeat family 767 812 IPR002885 -
Cca06g01128 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Cca06g01128 944 Pfam E motif 879 940 IPR046848 -
Cca06g01128 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 565 595 IPR002885 -
Cca06g01128 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 670 694 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 334 356 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 740 760 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 259 284 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 159 185 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 568 593 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 231 257 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 465 494 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 437 461 IPR002885 -
Cca06g01128 944 Pfam PPR repeat 129 156 IPR002885 -
Cca06g01128 944 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 738 919 IPR011990 GO:0005515
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 62 216 IPR011990 GO:0005515
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 519 617 IPR011990 GO:0005515
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 217 314 IPR011990 GO:0005515
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 413 516 IPR011990 GO:0005515
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 323 412 IPR011990 GO:0005515
Cca06g01128 944 Gene3D Tetratricopeptide repeat domain 618 717 IPR011990 GO:0005515
Cca06g01128 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 70 399 - -
Cca06g01128 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 190 491 - -
Cca06g01128 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 403 675 - -
Cca06g01128 944 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 619 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01128 Cca-Chr6 25545473 25548307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01128 292 943 Glycoside Hydrolase AT3G49170 30.344 6.76e-96 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01128 - - gmx:100775736 1585.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01128 06 25545473 25548307 Cca06g01128 06 25545473 25548307 ECH