Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01125 ATGGGCTCCCAAGGCCAATCCAAGGAGTTTCTGGATCTCATAAAGTCCATCGGCGAGGCCCGATCCAAGGCCGAGGAGGACCGAATCGTGCTCCGCGAGATCGAAACCCTAAAGCGCCGCATCAACGACGCCGACATCCCCAAGCGCAAGATGAAGGAGTACATCATCCGCCTCCTCTACGTCGAGATGCTCGGCCACGACGCCTCCTTCGGCTACATCCACGCCGTCAAGATGACGCACCACGACGCGCTCCTCCTCAAGCGCACCGGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTCAGCGACAACCACGACCTCATCATCCTCATCGTCAACACAATCCAGAAGGACCTCGCCTCGGATAACTACCTCGTCGTTTGCGCCGCGCTCAACGCCGTCTGCAGGCTCATCAACGAGGAGACCATCCCCGCCGTGCTCCCCCGCGTCGTCGAGCTTCTCAGCCACGCCAAGGACGCCGTTCGGAAAAAGGCCGTTATGGCGCTGCACCGGTTCTACCAGAAGTCTCCGTCCTCCGTTTCGCATCTGTTGTCCAATTTCCGTAAACGCCTCTCCGATAACGATCCCGGAGTGATGGGCGCTTCCTTGTGTCCTCTCTTTGATCTCGTTTCCGATGACGCCGACTCCTACAAGGACCTCGTCGTTAGCTTCGTCAGCATTCTGAAACAGGTCGCGGAACGGAGGTTGCCGAAGACTTACGATTATCACCAAATGCCTGCACCGTTCATTCAGATTAAGTTGCTGAAAATTCTTGCATTGTTGGGAAGTGGCGACAAGCAGGCTAGTGGACACATGTACACTGTGCTTGGCGATATTATTAAGAGGGGTGATTCCGTGAGCAACATAGGGAACGCTGTTCTCTATGAGTGTATATGCTGTGTTGCTTCTATATTTCCTAACCCTAAGTTATTAGAGGCTGCTGCGGATGTGATTGCAAAGTTTTTGAAGAGTGACAGTCATAATTTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGATAAAGTTGAGTCCACATATTGCAGAACAGCACCAATTGGCCGTCATTGACTGCTTAGAGGACCCTGATGATAGCCTGAAGCGAAAAACTTTTGAACTGTTATACAAAATGACTAAGTCCTCCAATGTGGAAGTGATTGTTGACCGAATGATTGATTACATGATTAGCATAAGTGATGACCATTATAAAACCTATATAGCATCTCGATGTGTGGAACTTGCAGAGCAATTTGCACCAAGTAATCATTGGTTTATACAGACCATGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTTAATGTTAAGGTGGCACATAATTTGACGCGGTTGATTGCTGAAGGATTTGGAGAGGACGATGATGCTGCAGATACTCAGTTGAGATCATCTGCTGTCGAGTCATATTTGCAAATTATTGGAGAGCCAAAGCTTCCATCTGTGTTTCTTCAAGTCATCTGTTGGGTTCTGGGGGAATATGGAACAGCAGATGGAAAGTATTCTGCTTCCTATATCAGCGGGAAGTTATGTGACATTGCAGAGGCATATTCTAATGATGAAAATGTTAAGGCTTATGCAATTTCAGCATTGATGAAAATTTATGCATTTGAAGTGGTAGCTCGGAGGAAAGTGGATATCCTACCTGAGTGTCAATATTTGATTGAAGAATTATTGGCATCCCACTCTACAGATTTGCAGCAACGTGCTTATGAATTGCAAGTCCTTATAGGTTTGGATGCACAAGCTGTTGAAACAATAATGCCAAGAGATGCAAGTTGTGAAGATATTGAGGTTGATAAAAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTCTAGAGAAGGGTGCTCAACCCTATATTCCTGAGGATGTGCGCACTGGAATGGGTAATATGAACAATTTCAGAAGTCAAGATCATCAGGAATCCTTGCAGCATGGTCTAAGATTTGAGGCATATGAAATTCCAAAGCCTCCAATGCAACCAAAAGTTACTCCAGATTCATTTGCATCTTCAGCAGTCATTAATCCAGTACCTGAGGCATCGTCTTCCAGGGAGATCCACCATATTTCATCAGTGGGATCAACATCAGAGCTTAAGCTACAACTTGATGGCGTTCAGAAGAAATGGGGTAATTCAACGTATTCATCTGCAGCATCATCTGCCCCTGCCTTAAATTTTTCTTCCCAAAAACCAAAGAATGGTACTACAGCTGTCAATTCAAAAGTACGTGATAGTTATGATTCAAGAAAGACACCTGTTGAGATTTCTCCGGAAAAGCAGAAGCTTGCTGCTTCATTGTTTGGTGGTTCAACTAAACCTGAGAAAAGATCATCTACTAGTCACAAGGTTCCAAAATCTAATGCAAGTGCTACTGTACCCAATGAAGCAGCCATGGAAAAAACAATTCATCAACCACCTCCTCCTGATTTGCTTGACTTGGGCGAACCAGCTGTCACTACAGCTCCTCCCCCTGTGGACCCATTCCAGCAATTGGAAGGGCTTCTTGACTCAAGCATTAATTCTGCAACAGATCATAATGTAGGTGCTGCTACAAACGCCCCTGATATTATGACATTCTATGCGGAGACTACTGCCAGTGGCGGCAACTCTATACCTGTGAGTGGGAATAATGTAAATCTTTTATCTGAATTGTCAAATGCAGCTGTGAAAGCTAATAGTGGAAACACAACTGTGACGCCTTTGCCCCAATCTAGTAAGGGTTCAAATGCTAAAGACTCTTTGCAGAAGGATGCACTAGTGAGGCAGATGGGTGTGAACCCCTCAAGTCAGAATCCTAACTTGTTCAGGGACTTGCTTGGCTAA 2961 0.4363 MGSQGQSKEFLDLIKSIGEARSKAEEDRIVLREIETLKRRINDADIPKRKMKEYIIRLLYVEMLGHDASFGYIHAVKMTHHDALLLKRTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLSDNHDLIILIVNTIQKDLASDNYLVVCAALNAVCRLINEETIPAVLPRVVELLSHAKDAVRKKAVMALHRFYQKSPSSVSHLLSNFRKRLSDNDPGVMGASLCPLFDLVSDDADSYKDLVVSFVSILKQVAERRLPKTYDYHQMPAPFIQIKLLKILALLGSGDKQASGHMYTVLGDIIKRGDSVSNIGNAVLYECICCVASIFPNPKLLEAAADVIAKFLKSDSHNLKYMGIDALGRLIKLSPHIAEQHQLAVIDCLEDPDDSLKRKTFELLYKMTKSSNVEVIVDRMIDYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNVKVAHNLTRLIAEGFGEDDDAADTQLRSSAVESYLQIIGEPKLPSVFLQVICWVLGEYGTADGKYSASYISGKLCDIAEAYSNDENVKAYAISALMKIYAFEVVARRKVDILPECQYLIEELLASHSTDLQQRAYELQVLIGLDAQAVETIMPRDASCEDIEVDKNLSFLNGYVQQSLEKGAQPYIPEDVRTGMGNMNNFRSQDHQESLQHGLRFEAYEIPKPPMQPKVTPDSFASSAVINPVPEASSSREIHHISSVGSTSELKLQLDGVQKKWGNSTYSSAASSAPALNFSSQKPKNGTTAVNSKVRDSYDSRKTPVEISPEKQKLAASLFGGSTKPEKRSSTSHKVPKSNASATVPNEAAMEKTIHQPPPPDLLDLGEPAVTTAPPPVDPFQQLEGLLDSSINSATDHNVGAATNAPDIMTFYAETTASGGNSIPVSGNNVNLLSELSNAAVKANSGNTTVTPLPQSSKGSNAKDSLQKDALVRQMGVNPSSQNPNLFRDLLG 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01125 986 MobiDBLite consensus disorder prediction 939 986 - -
Cca06g01125 986 MobiDBLite consensus disorder prediction 968 986 - -
Cca06g01125 986 Gene3D - 2 635 IPR011989 -
Cca06g01125 986 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 3 90 - -
Cca06g01125 986 MobiDBLite consensus disorder prediction 769 788 - -
Cca06g01125 986 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 139 982 - -
Cca06g01125 986 MobiDBLite consensus disorder prediction 939 958 - -
Cca06g01125 986 SUPERFAMILY ARM repeat 24 665 IPR016024 -
Cca06g01125 986 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 139 982 - -
Cca06g01125 986 Pfam Adaptin N terminal region 141 621 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cca06g01125 986 MobiDBLite consensus disorder prediction 769 876 - -
Cca06g01125 986 PIRSF AP4_epsilon 1 93 IPR017109 GO:0015031|GO:0030124
Cca06g01125 986 PIRSF AP4_epsilon 136 758 IPR017109 GO:0015031|GO:0030124
Cca06g01125 986 PIRSF AP4_epsilon 749 851 IPR017109 GO:0015031|GO:0030124
Cca06g01125 986 PIRSF AP4_epsilon 875 986 IPR017109 GO:0015031|GO:0030124
Cca06g01125 986 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 3 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01125 Cca-Chr6 25471967 25480387 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01125 K12400 - gmx:100819573 1561.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01125 06 25471967 25480387 Cca06g01125 06 25471967 25480387 ECH