Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01124 ATGGCGAGTGAATTCGGCGCCAACGCTCCTTCATCTCCTTCGTTCAATTCCGCGGAATCATATATTGGCTCCTTCATAAGCTTGATTTCCAAGTTCGAGATTCGCTACGAGGGCGTTCTCTATATCCTTAACCTTGACGATTCCACCATCGGCTTGAAGAACGTTAGATCCTATGGAACAGAGGGGAGAAGAAAAGATGGTCCACAAGTTCCTCCAAGTGAAAAGGTTTATGAATACATTCTTTTTCGAGGAAATGACATTAAGAATTTGCAGGTCAAGTCACCCTCAACATCTGCTAAACCAGAAGAGAAGAATTTTAGGGATCCAGCTATTATTCAGTCACAATATTCTGGGGTGCTAAGTTCTCCGGTGGCCCCAGCTGGTGGTAGAAGCTTGACAGAATCAATTCAAAGGCAAGATTGCCCTGCTATATCCAGTAGAGCCTTTCCTGTTGGGTTGGCTTCTCATCAATCTGTAACTCAGCCGGCCCCTTCAAATTTATCTGCTGCTACTCAGGTTGCTAGTCATCCATCTTTTTCCACAGCAATGTATTGGCAAGGACACAGTGGGACATCTAGCAATAGTTCTCATTCTCTGCTAAAATCTAGTTCTCTTCAACCCCCATTGATGGCAACATCCTTAGCTGTGCAGAATAAGATGCCAAATGCAGAAACTCAGGTACCTGCACAAGGGGGATGGGCAGCTTTATCAGAGAGTGGTCTTCCTGTATCTTCTGTCACAGCTTCTAGTCTTGTAAATCTGACTCCTTCACCTCCTCTTTCCTCTTTAAAATTGTTTGATTCTCCTGATTTTTTACCCCTTTTGTCTACCAAGACGCCTATGCCATATTCTGCATCCATGACTTTTGATGGATCAAACATGCCTCAGTTTTCTTCACCTCTCCAAGACATAAATTCTATTACTCAACTATCTGGAAACATTTGTCCTGACCCAAGGCCAATCCATCCTCGACATTCTGTCGATCATTCTGCTTCGTCATTTGTTGATTCTACTTCAGGTCCCTTGCCAACTGCACTGCCTTTGTTTACCCCAGATGAACTTGCACATGTTAGAGAACAATTATTTACTTACGCAAGTGATTTTAATTTTAATCAGAAGGATATGGGTTCTCTGTCTCTAACATCCTCTGGTTCCTCTGCATTAATGCCTTCTCCAGCATCTCAGGCACCACTACTTCCACTACCAACTGTGGTGCAAAAGCCTCAATACACAGCTCCACAATTCACTGAAGAATTTGATTTTGAGGCCATGAATGAAAAGTTCAAAAAGGATGAAGTATGGGGTTCTCTTGGAAAGGCAACAATAAATATAGAGGGAGTGCAGCAGGATAATGCTTTTCTCAGTTCTGGTGACAGAGAATGTCATGGAATGATACAAAACCCTAAGTCTGCATACAAGAAAGATGACTTCTTTGACACAATTTCTTGTAACTCTTTGACTCGTGGATCAAGGAATGGACAGAATCGTTTCTCAGAGAGAATGAAAGTGGATACTGAGACATTTGGAAATTTCCAGCAGAGGCCTAATTTTAGTCACGGTGGTTATGGTGCTGGACGGGGTGTGAATTTCAGGGGCTCATATAATTGGGGAAGGGGTTATAGCTACAATGGAAGAGGGCGTGGACCAAACTTTCCTTTCTAG 1662 0.4296 MASEFGANAPSSPSFNSAESYIGSFISLISKFEIRYEGVLYILNLDDSTIGLKNVRSYGTEGRRKDGPQVPPSEKVYEYILFRGNDIKNLQVKSPSTSAKPEEKNFRDPAIIQSQYSGVLSSPVAPAGGRSLTESIQRQDCPAISSRAFPVGLASHQSVTQPAPSNLSAATQVASHPSFSTAMYWQGHSGTSSNSSHSLLKSSSLQPPLMATSLAVQNKMPNAETQVPAQGGWAALSESGLPVSSVTASSLVNLTPSPPLSSLKLFDSPDFLPLLSTKTPMPYSASMTFDGSNMPQFSSPLQDINSITQLSGNICPDPRPIHPRHSVDHSASSFVDSTSGPLPTALPLFTPDELAHVREQLFTYASDFNFNQKDMGSLSLTSSGSSALMPSPASQAPLLPLPTVVQKPQYTAPQFTEEFDFEAMNEKFKKDEVWGSLGKATINIEGVQQDNAFLSSGDRECHGMIQNPKSAYKKDDFFDTISCNSLTRGSRNGQNRFSERMKVDTETFGNFQQRPNFSHGGYGAGRGVNFRGSYNWGRGYSYNGRGRGPNFPF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01124 553 ProSiteProfiles DFDF domain profile. 407 443 IPR025762 -
Cca06g01124 553 Gene3D - 13 97 - -
Cca06g01124 553 Pfam FDF domain 414 510 IPR019050 -
Cca06g01124 553 SMART LSM14_2 17 116 IPR025609 -
Cca06g01124 553 CDD LSm14_N 18 92 IPR025609 -
Cca06g01124 553 SMART FDF_2 413 512 IPR019050 -
Cca06g01124 553 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Cca06g01124 553 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
Cca06g01124 553 ProSiteProfiles FFD box profile. 470 485 IPR025761 -
Cca06g01124 553 ProSiteProfiles TFG box profile. 492 512 IPR025768 -
Cca06g01124 553 PANTHER DECAPPING 5-LIKE PROTEIN-RELATED 12 541 - -
Cca06g01124 553 PANTHER SCD6 PROTEIN-RELATED 12 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01124 Cca-Chr6 25457268 25467396 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01124 K18749 - gmx:102669894 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01124 06 25457268 25467396 Cca06g01124 06 25457268 25467396 ECH