Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01111 ATGGGTTTGCCAAGGTTTGGGCGTCCCAAGAATGATGGTGAATCCAGTTCGAACCTTTTCGTGGCCAATTGTGGGCCCGCAGTGGGGCTTTCTGATGATGACATTGCATCTGTGTTCTGCAAATTCGGAGAGTTGAAGGGAGTTTATGCAGCAGATGAGAGTGGGACACGTGTCATTGTGGCTTACGTTGAAGAGAGTTCTGCACAAGCTGCTTTAAAGGCTTTACATGGACGCCCGTGTCCTCAACTTGGAGGTCGATCCTTGCATATCCGTTATTCTGTGCTTCAGCCAACTCCACAGGATCAAGCTAGTGACTTTGTTCCTGTATCTATCACAGCATCAGATGTGAGCATTCCAGGCCTTTATCTAGTGCATGACTTCATTAGTGCAAAAGAAGAAGAGGAGTTGCTTCAAGCTGTAGACTGTCGGCCTTGGAACAGTCTTTCAAAAAGAAGGGTTCAACACTATGGTTATGAATTTCGTTATGATATTAGAAACGTTAATACAAGACATTGCTTAGGTGAACTTCCTCCATTTGTTTCTCCAATACTTGAAAGAATCTCTTCATGTCCAACTTTTGGGAATGTTCAAAATATAGTTTTGGACCAACTTACGGTAAATGAGTACCCACCTGGCGTGGGCCTGTCCCCCCATATAGACACTCACTCTGCATTTGAAGATTTAATTTTCAGCCTTTCATTATCAGGGCCTTGTATTATGGAGTTCAGACAATATGAAAATGGTGACTGGCTTCCCAGAGTTGCCTCAAGTGCTGATGCAAAAATAGAAAATCCAGAAGATCATTCAAATTTTATAAGGAGGGCTATCTATCTTCCCCCTCGATCTTTGCTACTCTTGTCTGGAGAAGCACGTTATGCATGGCATCATTACATTCCACACCACAAGATAGACAAAGTGAATGGCAGAGTCATCAGAAGGGCTTCAAGAAGGGTATCTTTTACATTACGTAAGGCTAGAGCAGGTTTGTGCAAATGTGAATTTCCTCAGTATTGTGATTCTCAAAGATAA 1029 0.4286 MGLPRFGRPKNDGESSSNLFVANCGPAVGLSDDDIASVFCKFGELKGVYAADESGTRVIVAYVEESSAQAALKALHGRPCPQLGGRSLHIRYSVLQPTPQDQASDFVPVSITASDVSIPGLYLVHDFISAKEEEELLQAVDCRPWNSLSKRRVQHYGYEFRYDIRNVNTRHCLGELPPFVSPILERISSCPTFGNVQNIVLDQLTVNEYPPGVGLSPHIDTHSAFEDLIFSLSLSGPCIMEFRQYENGDWLPRVASSADAKIENPEDHSNFIRRAIYLPPRSLLLLSGEARYAWHHYIPHHKIDKVNGRVIRRASRRVSFTLRKARAGLCKCEFPQYCDSQR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01111 342 PANTHER UNCHARACTERIZED 14 339 - -
Cca06g01111 342 SUPERFAMILY Clavaminate synthase-like 118 325 - -
Cca06g01111 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 326 IPR005123 -
Cca06g01111 342 Gene3D - 112 330 IPR037151 -
Cca06g01111 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Cca06g01111 342 SUPERFAMILY RNA-binding domain, RBD 9 100 IPR035979 GO:0003676
Cca06g01111 342 Gene3D - 7 107 IPR012677 -
Cca06g01111 342 PANTHER ALKYLATED DNA REPAIR PROTEIN ALKBH8 HOMOLOG 14 339 - -
Cca06g01111 342 Pfam 2OG-Fe(II) oxygenase superfamily 157 323 IPR027450 -
Cca06g01111 342 SMART rrm1_1 18 91 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01111 K10770 - gmx:100777529 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01111 06 25241871 25246098 Cca06g01111 06 25241871 25246098 ECH