Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01090 atgatgatgatgctgaGCCGCGGTGGCAGCAACCGTGCACTGTTGGCTGCCAAGGGCTTAAGCGCCGAAGTTGGAGCTCTTAAGAAATGGAGTTATGGTGTGAGGAGTGAGAGTACTTTGGCTTTCTCAGAGAAAGAGAAGAAGGTTGATTcttcttcttctgctgctgctgctgctgatgGGAAGAAAGAGGAAAAGGGAATAGCCAGTTATTGGGGCATTGAAGCCTCTAAGATCACGAAACCTGATGGCACAGAATGGAAATGGAATTGTTTTAGGCCATGGGAGACATACAAAGCAGATGTTTCGATTGATCTGAAGAAGCATCATGCGCCAGTCACCTTTCTTGACAAAATGGCGTTTTGGACTGTCAAAGCTCTTAGATATCCCACCGATGTCTTCTTCCAGAGACGATATGGATGCCGAGCGATGATGCTAGAGACAGTGGCAGCAGTTCCTGGGATGGTAGGAGGCATGCTACTGCACTGCAAATCCCTGAGAAGATTTGAGCACAGTGGTGGGTGGATCAAAGCACTGCTAGAAGAAGCAGAGAACGAGCGGATGCACCTGATGACGTTCATGGAAGTGGCAAAGCCCAAGTGGTATGAGCGTGCTCTAGTCATAACAGTGCAAGGTGTTTTCTTCAATGCATACTTCTTGGGGTATTTGCTCTCACCTAAATTTGCCCACCGAATGGTTGGTTACCTTGAGGAGGAGGCAATACACTCCTACACAGAGTTCCTCAAGGAGCTGGACAAGGGCAACATAGAAAATGTGCCTGCTCCAGCCATTGCCATTGACTATTGGCAGCTCCCACCGGATTCTACTTTAAGGGATGTTGTCATGGTTGTCAGAGCTGATGAGGCACATCATCGTGATGTCAACCACTTTGCATCGGACATACACTACCAAGGACGAGAGTTGAGAGATGCTGCTGCTCCAATTGGTTATCACTAG 957 0.4587 MMMMLSRGGSNRALLAAKGLSAEVGALKKWSYGVRSESTLAFSEKEKKVDSSSSAAAAADGKKEEKGIASYWGIEASKITKPDGTEWKWNCFRPWETYKADVSIDLKKHHAPVTFLDKMAFWTVKALRYPTDVFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAIDYWQLPPDSTLRDVVMVVRADEAHHRDVNHFASDIHYQGRELRDAAAPIGYH 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01090 318 Gene3D Alternative oxidase 71 314 IPR038659 -
Cca06g01090 318 PANTHER ALTERNATIVE OXIDASE 30 318 IPR002680 GO:0009916
Cca06g01090 318 Pfam Alternative oxidase 108 298 IPR002680 GO:0009916
Cca06g01090 318 PIRSF AO 9 314 IPR002680 GO:0009916
Cca06g01090 318 CDD AOX 135 302 IPR002680 GO:0009916
Cca06g01090 318 PANTHER UBIQUINOL OXIDASE 30 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01090 Cca-Chr6 24981461 24984425 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01090 3 318 Miscellaneous Gene Families AT3G22370 72.599 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01090 K17893 - gmx:547924 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01090 06 24981461 24984425 Cca06g01090 06 24981461 24984425 ECH