Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01087 ATGGCTTCTGCATCAGGGTGTCCACCTTTTGAATTTTCAAGCAAGTACTATCATGTATCTGAAAATGGAGGAGTGTGTGTGAGGCAGACCAGTTTCTTTGAAGGCAAACCAGTGCTAAATCAGGGAGTTGGCTACTCTGTCATTCTTGGTTTTGGTGCTTTCTTTGCTGTCTTCACCTCTTTCTTGGTGTGGCTGGAGAAGCGGTATGTTGGGTCACGTCACACGTCTGAATGGTTCAATACAGCAGGCAGAAGTGTCAAGACTGGGCTTATTGCTAGTGTCATCGTGTCTCAGTGGACATGGGCTGCTACAATCCTGCAAAGCTCTAATGTTGCATGGGAATACGGGGTCAGTGGACCTTTCTGGTATGCTAGTGGGGCTACCATCCAGGTATTGTTGTTTGGAATCATGGCTATAGAGATTAAAAGAAAGGCTCCTCATGCTCATACTGTGTGTGAAATTGTCAAGGCCCGTTGGGGGACTTCTGCGCACGTTGTTTTCCTCTTTTTCTGCTTCTTGACGAATATAATTGTGACGGCTATGTTGCTCCTTGGTGGTTCTGCTGTTGTAAATGCATTAACTGGAGTGAACATTTATGCTGCTAGCTTTCTAATACCACTTGGAGTAATTGTCTATACACTAGCGGGTGGACTCAAGGCCACGTTCTTAGCAAGCTATATCCATTCTGTCATAGTGCACATTGTTTTGGTAATTTTTGTCTACCTTGTATATACGGCTAGCAGTGAGCTTGGCAGCCCTTCTGTTGTTTACAATCGCCTGCTAGAGGTTGCAAGCAAATCAAGAATATGTCAGGATCCTATATCACACCAAGGGCAATCTTGTGGTCCTGTTGGTGGGAACCACAAAGGTTCTTACCTAACAATGCTGAGTTCAGGTGGCTTAGTTTTTGGGATTATAAACATTGTTGGCAACTTTGGCACTGTGTTTGTTGACAACGGATATTGGGTGAGTGCCATTGCTGCAAGACCTTCATCAACTCATAAGGGTTACTTGTTGGGAGGCTTGGTCTGGTTTGCTGTGCCATTTTCTTTGGCTACATCATTAGGTCTAGGAGCTCTGGCCCTTGATTTACCAATAAATGAAAGTGAGGCAGGTCGCGGACTTGTTCCCCCTGCTACTGCCGTGGCTTTGATGGGAAAAGGAGGATCTATTCTTCTTCTCACCATGCTTTTTATGGCAGTGACTTCTGCTGGTTCATCAGAACTAATTGCGGTTTCCTCGTTATGCACGTATGATATCTACCGAACTTACATAAATCCTAATGCAAGTGGAAATAAAATCCTCCGAGTGTCAAGGGGTGTTGTCTTGGGCTTCGGGTGTTTCATGGGGTTGCTAGCAGTCATACTGAACAAGGCTGGAGTTTCTTTAGGATGGATGTACCTTGCAATGGGAGTTCTGATTGGCTCAGCAGTTCTTCCTATAGCTTTTATGCTTCTATGGAGAAAAGCAAATGCAATAGGAGCCATTCTTGGAACAGTGTTAGGTTGTGTTTTAGGAATTATCACATGGTTGTCTGTTACAAAAGTACAATATGGCCGGATAAATCTCGATACAACAGGCAGAAATGCACCAATGCTTGCTGGAAACCTTGTCTCTATACTAACTGGAGGAGTTGTTCATGCTATCTGCAGCATGCTGTGGCCTCAGAACTATGACTGGAGTACCACCAAGCAAATCACAGTGGTTGAAAAGGAAAAGACTAACCTGCCAGCAGAAGAGTTTAAAGAAGAAAAGCTGATAAGTGCTAAAGCATGGGTGGTGAAGTGGGGTGTTGGTTTCACTGTTTTGATAGTCATACTATGGCCTATTCTCTCCCTCCCAGCAGGTGAGTTTAGTAAGGGCTACTTCTATTTCTGGGCAGTAATTGCTATAGGATGGGGTACTGTTGGTTCTGCAGTGATAATAGTTTTACCAATAATGGAGAGCTGGGAAACCATCCAGACTGTTATTATGGGCATGTTTACAAATGACAGGCTCATGGAAAAGGTGGAGGAGTTAAATTTCAAGTTGCAGACAATCATTCAGGCAATACCAGAAGCAGAGAGACACTACTTGCTTGAGAAGGGAAAGGCCAAAAAATTGGAAGCCTCAGAGCAACAGGCTTGTTCTCTTCCTGCATAA 2142 0.4421 MASASGCPPFEFSSKYYHVSENGGVCVRQTSFFEGKPVLNQGVGYSVILGFGAFFAVFTSFLVWLEKRYVGSRHTSEWFNTAGRSVKTGLIASVIVSQWTWAATILQSSNVAWEYGVSGPFWYASGATIQVLLFGIMAIEIKRKAPHAHTVCEIVKARWGTSAHVVFLFFCFLTNIIVTAMLLLGGSAVVNALTGVNIYAASFLIPLGVIVYTLAGGLKATFLASYIHSVIVHIVLVIFVYLVYTASSELGSPSVVYNRLLEVASKSRICQDPISHQGQSCGPVGGNHKGSYLTMLSSGGLVFGIINIVGNFGTVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGALALDLPINESEAGRGLVPPATAVALMGKGGSILLLTMLFMAVTSAGSSELIAVSSLCTYDIYRTYINPNASGNKILRVSRGVVLGFGCFMGLLAVILNKAGVSLGWMYLAMGVLIGSAVLPIAFMLLWRKANAIGAILGTVLGCVLGIITWLSVTKVQYGRINLDTTGRNAPMLAGNLVSILTGGVVHAICSMLWPQNYDWSTTKQITVVEKEKTNLPAEEFKEEKLISAKAWVVKWGVGFTVLIVILWPILSLPAGEFSKGYFYFWAVIAIGWGTVGSAVIIVLPIMESWETIQTVIMGMFTNDRLMEKVEELNFKLQTIIQAIPEAERHYLLEKGKAKKLEASEQQACSLPA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01087 713 TIGRFAM sss: transporter, solute:sodium symporter (SSS) family 79 502 IPR001734 GO:0016020|GO:0022857|GO:0055085
Cca06g01087 713 PANTHER UREA ACTIVE TRANSPORTER 26 689 - -
Cca06g01087 713 Coils Coil 663 683 - -
Cca06g01087 713 CDD SLC5sbd_DUR3 45 554 - -
Cca06g01087 713 Gene3D Sodium/glucose cotransporter 69 612 IPR038377 -
Cca06g01087 713 ProSiteProfiles Sodium:solute symporter family profile. 44 516 IPR001734 GO:0016020|GO:0022857|GO:0055085
Cca06g01087 713 PANTHER - 26 689 IPR031155 GO:0015204|GO:0016021|GO:0071918
Cca06g01087 713 Pfam Sodium:solute symporter family 80 502 IPR001734 GO:0016020|GO:0022857|GO:0055085
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01087 7 700 Organic Solute Cotransporters AT5G45380 77.969 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01087 K20989 - gmx:100784391 1321.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01087 06 24968155 24972638 Cca06g01087 06 24968155 24972638 ECH