Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01075 ATGGGTAATCCACGGAAATCGAGGACCGGCGACGAGCTTCATACGGCGGCAAGGTCCGGCGATCTCATCGCCGTTCAGTCAATTTTGGCTTCTAATCCTTTGGCCGTTAATTCCAGAGATAAGCATTCCCGAACACCTCTACATTTAGCTGCATTTTCTGGGCAAGCAGAGATGGTCACTTTTCTCTGCAAGAACAAGGCTGATGTGGGTGCTTCTGCTATGGATGACATGGCTGCAATACACTTTGCTGCACAGAAGGGACATTTAGAAGTTGTTCGTGCTCTACTTTCTGCTGGGGCCTCTCTCAAAGCCTCTACGCGCAAAGGTTTGACGTCATTACACTATGCTGTTCAAGGCTCCCATTTGGAACTCGTCAAGTACTTGGCCAAGAAAGGGGCAAACCTTGGTGCCAGGACAAAGGCAGGAAAGACCCCGTTGGATCTTGCTACCAATGAGGAAATCCGCTCCTTTCTGGAGGAATTTGAAAGCTCAGCTAAGAGTGGAGAATTGGGAAAGAAAGATGAAGATGAAGCTGAAGAATCTGATCCAAAGATATCCAAAGTGGGATCGGAAGATGATTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGAAGATGA 684 0.4152 MGNPRKSRTGDELHTAARSGDLIAVQSILASNPLAVNSRDKHSRTPLHLAAFSGQAEMVTFLCKNKADVGASAMDDMAAIHFAAQKGHLEVVRALLSAGASLKASTRKGLTSLHYAVQGSHLELVKYLAKKGANLGARTKAGKTPLDLATNEEIRSFLEEFESSAKSGELGKKDEDEAEESDPKISKVGSEDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01075 227 ProSiteProfiles Ankyrin repeat region circular profile. 108 140 - -
Cca06g01075 227 SUPERFAMILY Ankyrin repeat 13 156 IPR036770 -
Cca06g01075 227 MobiDBLite consensus disorder prediction 165 189 - -
Cca06g01075 227 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Cca06g01075 227 SMART ANK_2a 108 137 IPR002110 GO:0005515
Cca06g01075 227 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cca06g01075 227 SMART ANK_2a 42 71 IPR002110 GO:0005515
Cca06g01075 227 Pfam Ankyrin repeats (3 copies) 13 71 IPR002110 GO:0005515
Cca06g01075 227 Pfam Ankyrin repeats (3 copies) 80 158 IPR002110 GO:0005515
Cca06g01075 227 Gene3D - 3 75 IPR036770 -
Cca06g01075 227 MobiDBLite consensus disorder prediction 165 202 - -
Cca06g01075 227 Coils Coil 194 194 - -
Cca06g01075 227 ProSiteProfiles Ankyrin repeat region circular profile. 75 104 - -
Cca06g01075 227 PRINTS Ankyrin repeat signature 91 105 IPR002110 GO:0005515
Cca06g01075 227 PRINTS Ankyrin repeat signature 43 58 IPR002110 GO:0005515
Cca06g01075 227 ProSiteProfiles Ankyrin repeat region circular profile. 42 69 - -
Cca06g01075 227 PANTHER - 1 187 - -
Cca06g01075 227 ProSiteProfiles Ankyrin repeat profile. 42 74 IPR002110 GO:0005515
Cca06g01075 227 Gene3D - 76 170 IPR036770 -
Cca06g01075 227 PANTHER ANKYRIN REPEAT PROTEIN 1 187 - -
Cca06g01075 227 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01075 6 150 Miscellaneous Gene Families AT5G02620 33.557 1.62e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01075 - - gmx:100812821 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01075 06 24829688 24831247 Cca06g01075 06 24829688 24831247 ECH