Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01043 ATGGCAACTCTTGAAGACATTGGGGTCTCAGCAGCCATCAACATTCTCTCAGCCTTTGCTTTCTTGCTGGCTTTTGCTCTGCTGAGAATCCAACCCATCAATGACAGGGTCTACTTTCCCAAGTGGTATATCAATGGAGGGAGAAGTAGTCCAAGGAGGTCTGGAAATTTTGTGGCCAAGTTTGTCAACCTCAATTTCAGGACTTACCTCACTTTTCTCAACTGGATGCCTCAGGCTCTCAGAATGTCTGAGTCTGAGATTATCAGCCATGCTGGCCTTGACTCTGCTGCTTTCCTTAGAATCTATACTCTTGGCTTAAAGATTTTTGCTCCAATAGCAGTTGTTGCACTCCTAGTTCTTATACCAGTCAACGTATCAAGTGGGACATTATTTTTCCTAAAAAAAGAATTGGTAGTAAGTGATATTGATAAACTCTCAATATCAAATGTTCCACCTAAATCTATAAGATTTTTTGTTCACATAGCATTGGAATACATGTTCACAATATGGATTTGTTTTCTGCTTTACAAAGAGTATGATAATATAGCATCAATGAGATTGCATTTCTTGGCCACACAACGCAGGCGTGTGGAGCAATTCACTGTAGTTGTCAGGAATATCCCTCATATTTCTGGTCACACAGTATCAGATAGTGTGGATAGCTTCTTTCAAACAAACCACCCAGAACATTATATTGGACACCAGGCCATCTACAATGCTAACAGATTTGCTAAATTTGCAAAAAGGAGAGACAGACTCCAAAATTGGCTGGACTATTACCAGCTCAAGTTTGAGAGACATCCTGAAAAGAGGCCAACCATCAAGACTGGATTTTTAGGGCTTTGGGGTGGGAAAGTTGATGCAATTGAGTACTACAAGCATTCAATTAAGGAACTTGATAAGATGATGACATTGGAACGCCAGAAGATTATAAAGGATCCCAAAGCTATTTTGCCAGTTGCTTTTCTTTCATTCAATTCCCGTTGGGGAGCATCAGTTTGTGCACAAACCCAACAAAGCAAGAATCCAACCCTCTGGTTGACTGATTGGGCTCCGGAGCCACGCGATGTATATTGGCGGAACTTGGCCATACCATTTGTTTCTTTAAGCATCCGAAAGCTTATAATTTCGTTGTCTGTGTTTGCCTTGGTATTCTTCTACATGATTCCCATTGCTTTTGTGCAATCCCTTGCAAATTTGGAGGGTCTTGAAAGAGTAGCTCCTTTCCTCAGACCAGTAATAGAATTGAAATTCATCAAATCCTTTCTACAAGGTTTTCTTCCTGGTTTGGCTCTTAAAATATTTTTGTACATTCTACCCGCAGTTCTGATGATCATGTCAAAAATTGAGGGGTATATTGCATTGTCAACACTTGAGCGTAAGACAGCTGCAAAATATTATTACTTCATGTTGGTGAATGTTTTCTTGGGAAGCATTGTGACTGGGACTGCATTTGAGCAATTGCATTCTTTCCTTCATCAGTCACCTACACAGATTCCTAGAACAATTGGAGTTTCCATTCCAATGAAGGCTACTTTCTTTATGACATATATAATGGTTGATGGATGGGCTGGAATTGCTGGTGAGATTCTCAGATTAAAGCCATTGGTTATATACCATCTCAAGAACATGTTCTTAGTTAAAACAGAAAGAGATAGAGGAAAGGCAATGGACCCTGGGAGTGTGGACTTTCCAGAGACTATTCCAAGTCTTCAGCTATACTTCCTTCTTGGAATTGTGTATGCTGTGGTGACTCCAATCCTTCTTCCGTTCATACTAATCTTCTTTGCCTTCGCATATTTGGTTTACCGTCATCAGATAATCAACGTCTACAACCAACAATATGAAAGTGCTGCTGCATTTTGGCCACAAGTTCACAGCCGCATTATAGCAAGCTTGTTAATATCACAGCTTCTTCTGTTGGGTCTGCTTAGCACCAAAAAGGCAGCTAAATCAACACCTTTGCTTGTCATGTTACCAATATTAACATTTGCATTTCACAAGTACTGCCAGAGACGTTTTGAGCCAGCATTTAGGAAGTACCCTCTTGAGGAAGCAATGTCAAAGGATTTATTGGAGAAAAGCACAGAACCTGACCTGAACATAAAGGCTTATTTGGCTGATGCTTACTTGCATCCAATCTTCAGGTCATTTGAGGTAGAAGAAGAGGAATTGGTTGAAGTCAGAGTAGATAAACACCAAACTAATGTAGCTAGTGCACCACCAAGTGAGCCTAGTTCACCCTCTCCACCCCATCATCTCGATCAACCATCCCCACCCCATCATGATCATCAACCCTCCCAACCTCAATATGGTGACTATCCAATTCCAAATCCAACTTTACCACCAGGTTATTACTACCAATACCATCCTCCCTCCCCTTCATATGTTTATCACAATTATCAGTACCAAGGTTAG 2418 0.4078 MATLEDIGVSAAINILSAFAFLLAFALLRIQPINDRVYFPKWYINGGRSSPRRSGNFVAKFVNLNFRTYLTFLNWMPQALRMSESEIISHAGLDSAAFLRIYTLGLKIFAPIAVVALLVLIPVNVSSGTLFFLKKELVVSDIDKLSISNVPPKSIRFFVHIALEYMFTIWICFLLYKEYDNIASMRLHFLATQRRRVEQFTVVVRNIPHISGHTVSDSVDSFFQTNHPEHYIGHQAIYNANRFAKFAKRRDRLQNWLDYYQLKFERHPEKRPTIKTGFLGLWGGKVDAIEYYKHSIKELDKMMTLERQKIIKDPKAILPVAFLSFNSRWGASVCAQTQQSKNPTLWLTDWAPEPRDVYWRNLAIPFVSLSIRKLIISLSVFALVFFYMIPIAFVQSLANLEGLERVAPFLRPVIELKFIKSFLQGFLPGLALKIFLYILPAVLMIMSKIEGYIALSTLERKTAAKYYYFMLVNVFLGSIVTGTAFEQLHSFLHQSPTQIPRTIGVSIPMKATFFMTYIMVDGWAGIAGEILRLKPLVIYHLKNMFLVKTERDRGKAMDPGSVDFPETIPSLQLYFLLGIVYAVVTPILLPFILIFFAFAYLVYRHQIINVYNQQYESAAAFWPQVHSRIIASLLISQLLLLGLLSTKKAAKSTPLLVMLPILTFAFHKYCQRRFEPAFRKYPLEEAMSKDLLEKSTEPDLNIKAYLADAYLHPIFRSFEVEEEELVEVRVDKHQTNVASAPPSEPSSPSPPHHLDQPSPPHHDHQPSQPQYGDYPIPNPTLPPGYYYQYHPPSPSYVYHNYQYQG 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01043 805 MobiDBLite consensus disorder prediction 772 787 - -
Cca06g01043 805 Pfam Cytosolic domain of 10TM putative phosphate transporter 199 361 IPR027815 -
Cca06g01043 805 Pfam Calcium-dependent channel, 7TM region, putative phosphate 372 644 IPR003864 GO:0016020
Cca06g01043 805 PANTHER TO DEHYDRATION PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 742 - -
Cca06g01043 805 MobiDBLite consensus disorder prediction 735 787 - -
Cca06g01043 805 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 2 742 IPR045122 GO:0005227
Cca06g01043 805 Pfam Late exocytosis, associated with Golgi transport 7 178 IPR032880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01043 Cca-Chr6 24394136 24402646 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01043 K21989 - gmx:100820282 1335.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01043 06 24394136 24402646 Cca06g01043 06 24394136 24402646 ECH