Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01026 ATGGCCGCTCTGCAATACTTGGAATCGCTCCGCAACGCGCACCCCGAGCTCGCCGATTGGTACAATTCGCTTGCGGATCTGTACCAGAAGAAGCTCTGGCACCAGCTCACTCTCAAGCTCGAGCAGTTCGTAGCTCTCGCCGTTTTCCAGGCTGGTGATGCTTTAATACAATTATATCACAACTTCATCACAGACTTTGAGACCAAAATTAACCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTCTCGGCAATATTCTGAGAAAGAAGCTGCTGTTGGTTATCTTGGAGGGGTCATTGAGAAACTGCAAGCCACAAGAGAGCAGCGCATAGAAGAACCTATTCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAACTTCTAGAAGATGGAAAGAGTACACTTGACAGCATGACAGATATCGATCCATCTGTATATGCTAGCTATTACTGGGTATCATCTCAGTATCATAAAACACGTCAAGAATTTGCTGAGTTCTACAAAAGTGCCCTTCTCTACTTGGCATACACATCAGTGGAGTCCCTATCAGAATCATTCAAGCTGGATTTGGCATTCGATTTGTCCCTCTCTGCCCTTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTCCAGGCATTCAATTCTGGTGATCTAGCACGATATCAAGAGTTATGTCGGGTGCATAATGCTTCTTTAAGAGCCCAACCAGCACTAGTTCAAAATGAACAGAAGTTGTTGGAAAAGATCAACATTCTCTGTCTGATGGAGATTATATTCAGTCGGCCTTCCGAAGATCGAACTATTCCCTTGAGTGTAATTGCAGAGCGAACCAAACTTTCTATAGAGAATGTGGAGCATCTCCTTATGAAGAGCCTATCTGTCCATCTAATTGAGGGTATAATTGATCAAGTTGAAGGGACAGTGCACGTTTCATGGGTGCAGCCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTGGACAGTTGGACAGGAAAAGTACACACTGCATTGTTGTCCATCGAGGCGGAAACACCTGATCTAATTGGGTCGTGA 1161 0.4367 MAALQYLESLRNAHPELADWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLGGVIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQYHKTRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLARYQELCRVHNASLRAQPALVQNEQKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01026 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Cca06g01026 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Cca06g01026 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 384 - -
Cca06g01026 386 Pfam PCI domain 238 343 IPR000717 -
Cca06g01026 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Cca06g01026 386 SMART PINT_4 272 365 IPR000717 -
Cca06g01026 386 Gene3D - 214 343 - -
Cca06g01026 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 384 IPR035298 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01026 K03039 - gmx:100804455 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01026 06 24256657 24261979 Cca06g01026 06 24256657 24261979 ECH