Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01023 ATGTCTCGCGACATTGGTCAGCCAATTGATGAATCAAAGCGACTAAAATTGGGTAAATATTCAAGGGTGTTGTCTCGACTGTTAAGTCCTCTAGAAGTCAAGCAAATTATGAAAGCAGAGAAAGAATGTTCTGCTAATCAGCTTCGGCCAGAGCAGCTGATTGTCAATGGTTTGCCCCTGAAGCCTGATGAGATGGCAGAATTACTCGGATGCCCCTTACCTCCACGTAAGCTGAAGCCTGGTAGATATTGCTATGACAAAGAATCTGGTCTCTGGGGAAAGGTGATGGAGTGTTGCAATGAAAAATTTATTTTCAAATTCACAAGGTGGACTTGTCAACATGAAGGGGAAAAACCTGACAGAATCATAAGTTCAAACTTGAATTTCAGTGGGAAACTTAGCCTCGATGCTAGTAATGGAAACACTGAGGTTTACATGAATGGTCGAGAGATCACAAAACTTGAATTGAGGGTACTCAAGCTGGCAAATGTGCAGTGCCCCCGTGATACACATTTTTGGGTTTACGATGATGGTCGTTATGAGGAGGAAGGTCAAAATAATATAAGAGGAAACATTTGGGAGAAGGCATCAACAAGATTCGTATGTGCCTTATTCTCTCTACCTTTTCCCCATGGTCAGCCTCATGTGCCAAAGGATGAAACTAGTCACTATACCATAGCTCCTAATTATCTGGAACCGAAAAAAATTCAGAAGCTTCTTCTTCTTGGAATTCAAGGATCTGGTACTAGCACTATATTTAAGCAGGCCAAATTTTTGTATGGGAACAAATTTTCTGCTGAAGAGCTGCAGGATGTCAAACTGATGACCAGAGCAACATGTTCTCCTGGTGAAAATCAAACTACGGAACTAGGCAGCAATGGTGAAATAAGCAATACTAGTGAATGCATCTATTCCCTCAACCCAAGACTAAAACATTTCTCTGACTGGCTCCTTGACATTATAGCCACTGGGGATTTAGATGCATTCTTCCCTGCAGCCACACACGAATATGCACCCTTAGTTGAAGAAGTATGGAAGGATCCAGCAATACAAGAAACCTTCAAAAGAAAAATTGAGCTTCACTTTCTTCCAGATATTGCAGAATACTTCTTAAGCCGGGCCGTTGAGATATCTAGCAATGAATATGAACCTTCGGAAAGGGATATTCTATATGCAGAAGGGGTTACTCAGGGAAATGGTTTGGCTTTCATGGATTTTTCACTTGATGACCGTATCCCAAAGTCTGAAACTTATTCAGATAACCTGGATGCTCAGCTACCACCATTGACCAAGTAA 1296 0.4144 MSRDIGQPIDESKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLRPEQLIVNGLPLKPDEMAELLGCPLPPRKLKPGRYCYDKESGLWGKVMECCNEKFIFKFTRWTCQHEGEKPDRIISSNLNFSGKLSLDASNGNTEVYMNGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPFPHGQPHVPKDETSHYTIAPNYLEPKKIQKLLLLGIQGSGTSTIFKQAKFLYGNKFSAEELQDVKLMTRATCSPGENQTTELGSNGEISNTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATHEYAPLVEEVWKDPAIQETFKRKIELHFLPDIAEYFLSRAVEISSNEYEPSERDILYAEGVTQGNGLAFMDFSLDDRIPKSETYSDNLDAQLPPLTK 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01023 431 Pfam G-protein alpha subunit 234 409 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca06g01023 431 Gene3D - 271 395 IPR011025 GO:0007165
Cca06g01023 431 ProSiteProfiles G-alpha domain profile. 235 431 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca06g01023 431 SUPERFAMILY Transducin (alpha subunit), insertion domain 308 392 IPR011025 GO:0007165
Cca06g01023 431 Gene3D - 238 398 IPR027417 -
Cca06g01023 431 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 5 431 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca06g01023 431 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 5 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01023 Cca-Chr6 24225473 24229643 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01023 - - ccaj:109807996 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01023 06 24225473 24229643 Cca06g01023 06 24225473 24229643 ECH