Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01002 ATGGCCTCAAAGCTCAAACATGGGTCCTCTACGGTTCGGAAGATCACGCAGCTGAGCAATGATTTGGATCAGGAGGGTGAGGATGGAAGTATTGCTACCTACACTGTGCACATTCCTCTAACGCCTGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCTAATTCTCGGAGGGTGGAGGACCAATACGCTTCGAGTTCCATGTTCACCGGTGGTTTCAACCAGCTCACACGTGCGCATTTGAAGGACAAGGTGAGTGAGTCCGAGTCCAGCCACCCCCAGATGGCTGGTGCAAAAGGGTCCTCTTGTGCAGTGCCTGGGTGTGATGGGAGGGTCATGACTGATGAGAGGGGTTTGGATGTTGTCCCTTGTGAGTGTGATTACAAGATTTGTAGGGATTGTTATAGGGATGCTGTGAGGACTGGTGATGGGATTTGCCCTGGTTGCAAGGACCCTTACAAGGAGCCTGAGGTGCAAGGTGGGGCCAACCAACAGACACTGCCTTTGCCTCCTGGTGCTGGGGTTAGTAAGATGGAGAGGAGGTTGTCTTTGATGAAATCCAGGAGCCAGAATAATGAGTTTGATCATGCTCAGTGGTTGTTTGAGACTAAGGGGAGTTATGGATATGGGAATGCTATGTGGCCTAAAGACTCTGAGCCTGATGGAAGTTCTGTTGCTGGCTCTGATTGGATGGGGGGTGATCCTAATGTCTTCAGCGAAAAACAGTGGAAACCCTTGACCAGGAAATTGAGTATTTCTGCTGCAGTCCTCAGCCCTTATCGACTCATTATATTGATTCGTCTAGTGGTTCTAGCTTTATTTCTAAAGTGGAGGATCCAAAACCCCAATGAAAATGCAGTTTGGCTGTGGGGCATGTCTGTGGTTTGTGAAATCTGGTTTGGATTCTCCTGGCTGCTTGACCAGCTTCCCAAGCTCTTCCCCATAAACCGTGTTGCTGATCTTGATGTTTTGAGAGAGAAGTTTGAAACTTCTAATCCCACTAATCCTACAGGAAAGTCTGATCTTCCAGGAATAGATATGTTTGTGTCAACCGCTGATCCAGAAAAAGAACCACCACTCGTTACTGCAAATACTATTCTTTCTATTCTAGCTGCTGATTACCCTGTTGAGAAACTTTCATGTTACGTCTCTGACGACGGAGGTGCACTTCTAACTTTTGAGGCCATGGCTGAGGCTGCAAGTTTTGCCAATATGTGGGTTCCTTTTTGTCGGAAGCATGACATTGAGCCCAGGAACCCGGAATCTTATTTCAACCTGAAGAGAGATCCCTTCAAGAACAAAGTGCGCTCTGACTTTGTGAGGGACCGCAGGCGTGTAAAGCGTGAGTATGATGAGTTCAAGGTTCGGATTAACAGCCTCCCTGATTCGATCCGGCGGCGTTCTGATGCTTACAATGCTAGAGAAGAAATCAAAGCTTTGAAGAAATGGAGAGAAAATGGACATGAAGAACCAATGGAGAATTTGAAGTTTCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCTGGTACTTGGACCACTTCTGCACCAGAACATTCCAGGGGTGATCATGCCAGTATCATACAGGTAATGTTAAAACCCCCAAGTGATGAACCACTGACAGGCACAGCATCAGAATCAAATGCCTTGGATTTAACTGAAGTTGACATTCGTCTTCCCATGCTTGTCTACGTTTCACGCGAAAAACGACCCGGCTATGATCACAACAAAAAGGCTGGTGCCATGAATGCATTGGTTAGAGCCTCAGCCATAATGTCTAATGGCCCTTTCATACTTAACCTTGACTGTGACCATTACATATTCAACTCCCAAGCCTTGAGAGAAGGAATGTGCTTCATGATGGACCGTGGCGGGGAGAGGCTTTGCTATGTTCAATTTCCTCAAAGGTTTGAAGGAATCGACCCCAATGACCGCTACGCCAATCATAACACAGTCTTCTTTGATGTCAACATGCGAGCTCTTGATGGAATTCAAGGTCCTGTGTATGTTGGCACAGGTTGCCTATTTCGAAGAACTGCACTCTACGGCTTTGATCCACCACTGCTGAAAGAAGAAACCAGTTGGTTCGGTCGAAAGAACAAGAAATCCTCGACAGTGGCTTCTGTCCCTGAGGCTGGTTCCGAGGAACAATCATTGAGGAATGGCAATGTTTTTGAGGATGAAGAAATGACCACTGCTCTTGTTCCAAAGAAATTTGGCAACTCAAGCCTTCTTGTGGATTCAATAAAGGTGGCAGAGTTTCAAGGACTCCCCCTTGCTGATCACTCATCTATCAAATATGGCCGTCCACCCGGCGCTCTAACTCTCCCTCGTGATCCTCTCGATGCTGCCACCGTTGCTGAGGCCATCAATGTCATCTCATGCTGGTATGAGGACAAGACTGAATGGGGACTAAGAATTGGTTGGATTTATGGTTCAGTCACTGAGGATGTTGTGACAGGCTATAGAATGCACAATAGAGGATGGAAATCAGTATATTGTGTAACCAAAAGAGATGCATTCCGTGGCAGTGCTCCAATCAATCTAACAGATAGGCTGCACCAAGTTCTTAGATGGGCAACAGGCTCAGTCGAAATCTTCTTTTCACGCAACAATGCTCTTCTAGCTAGCTCAAGGTTGAAGTTTCTTCAGAGAATTGCTTACCTCAACGTTGGAATCTACCCTTTCACTTCAATCTTCCTCATTGTTTATTGCTTCCTTCCTGCTCTCTCACTTTTCACTGGCGAGTTCATTGTTGAGAGCCTTCAAGTTACCTTCCTAGTGTACCTTTTAGGCATAACCTTGACCCTTGTGTTCCTTGCTGCATTGGAAATCAAGTGGTCAGGGATTGAGCTTGAAGAGTGGTGGAGGAATGAACAGTTCTGGCTGATTGGAGGCACAAGTGCTCATTTTGCTGCTGTGCTTCAGGGTCTGCTTAAGGTCACTGCTGGCATTGAGATTTCGTTCACTTTGACATCAAAATCTGGCGGTGATGACGAAAACGATGAGTATGCGGATCTATATGTCATCAAGTGGACGTCTCTGATGATACCACCAATCACAATCATGATGGTTAACTTGATAGCAATTGCTGTGGCTGTTAGCAGGACCATATATAGTGAGGATCAGCAATGGAGCAGTTTGCTTGGAGGTGTGTTTTTCAGCTTTTGGGTGTTGGCTCATTTGTATCCCTTTGCTAAAGGGTTGATGGGTAGAAGGGGTAGGACACCAACGATTGTGTTTGTGTGGTCTGGTCTAATATCAATTACTATCTCACTTCTCTGGGTTGCTATTGATCCTCCCTCTGGCAGTAGCCAAATTGGAGGCTCATTCCAGTTCCCTTGA 3348 0.4636 MASKLKHGSSTVRKITQLSNDLDQEGEDGSIATYTVHIPLTPDNQPMEISLERSNSRRVEDQYASSSMFTGGFNQLTRAHLKDKVSESESSHPQMAGAKGSSCAVPGCDGRVMTDERGLDVVPCECDYKICRDCYRDAVRTGDGICPGCKDPYKEPEVQGGANQQTLPLPPGAGVSKMERRLSLMKSRSQNNEFDHAQWLFETKGSYGYGNAMWPKDSEPDGSSVAGSDWMGGDPNVFSEKQWKPLTRKLSISAAVLSPYRLIILIRLVVLALFLKWRIQNPNENAVWLWGMSVVCEIWFGFSWLLDQLPKLFPINRVADLDVLREKFETSNPTNPTGKSDLPGIDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPFKNKVRSDFVRDRRRVKREYDEFKVRINSLPDSIRRRSDAYNAREEIKALKKWRENGHEEPMENLKFPKATWMADGTHWPGTWTTSAPEHSRGDHASIIQVMLKPPSDEPLTGTASESNALDLTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIFNSQALREGMCFMMDRGGERLCYVQFPQRFEGIDPNDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPLLKEETSWFGRKNKKSSTVASVPEAGSEEQSLRNGNVFEDEEMTTALVPKKFGNSSLLVDSIKVAEFQGLPLADHSSIKYGRPPGALTLPRDPLDAATVAEAINVISCWYEDKTEWGLRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTGEFIVESLQVTFLVYLLGITLTLVFLAALEIKWSGIELEEWWRNEQFWLIGGTSAHFAAVLQGLLKVTAGIEISFTLTSKSGGDDENDEYADLYVIKWTSLMIPPITIMMVNLIAIAVAVSRTIYSEDQQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAIDPPSGSSQIGGSFQFP 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01002 1115 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 48 1113 - -
Cca06g01002 1115 Pfam RING/Ubox like zinc-binding domain 105 154 - -
Cca06g01002 1115 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 543 692 IPR029044 -
Cca06g01002 1115 SUPERFAMILY RING/U-box 92 157 - -
Cca06g01002 1115 SUPERFAMILY Nucleotide-diphospho-sugar transferases 360 715 IPR029044 -
Cca06g01002 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 167 IPR013083 -
Cca06g01002 1115 Pfam Cellulose synthase 345 1104 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca06g01002 1115 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 48 1113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01002 Cca-Chr6 23825644 23830695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01002 13 1115 Glycosyltransferase AT3G03050 76.297 0.0 1758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01002 K20924 - gmx:100813900 2008.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01002 06 23825644 23830695 Cca06g01002 06 23825644 23830695 ECH