Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00992 ATGGAAGCAAAAAGCGCAAAGGCATTGGATAGGGTTGGACTCAATCTGAAGCGCAAGCGAGCGACCCGATATGCTGCACTTCTAAGTGGAGCTTCGCAACCAGCGTTAGGTCATTGGCCATCATTTACGTCACCAACAAGCAGGGTTGTGAAACGGAGGAGATTGGGTGGATATAAAAACAAGCTGACAAATGCTGGTCCTCATATTGGACAGTCTTTAGTTAGACGTTTTCTGAATTATAAAAAGAGTGGGAGACTGGAGCGTTTGATGTTCTATAAGAATGGTGAATGGTTGGATTTTCCTAAGGACGTTGTTGACTTGGTTAAGAAAGATCTTGAAGTCAAGAAGAAGGTCGCCGTGGAAGTGGAGTTAAATGGGTATCATCTTGTGTTTAATTTTTTTCATCTGCATAAGGTGGACTTGAAAACTGGCTTGCAACAACCTATAGCTTGGATTGATGAAGCGGGGAGCTGCTTTTTCCCTGAAATCTATGCTGCTTCTGATGAAGAACCTTATGATTTCGTCAAACAAGAAAGTGGAAAAAGTCAGgaatcgtatgaatctaatgaaataaaattacatttagaagttgaaataaatggagtggatcaatccaggttgagtgaGTGTAGTGGAGAGTCCAATGCTCTAGTTAAGGGTATTCAAATTGACACTAAACAAAACTGCTGTCAATATGATGTAGAAGTTGAAGATAGCATTAACAAAAAGGACTGTGGAAATGTTGGGGAAGCTATTCAGCAAAATCAAGACATAGGTTTAGATGCGTATACTGAATTGATATATGGAAATTTGGATTTGAATTCTGTACAAAAGATGTTTCTTAAGGGAATGAATAGTTTTGGCAGTACTGATTCTGACATAGTTGAGATTTCCCACTGCTCAGGTGCGTCAATGCAAGCACGATGGGAGCTGTTCCATAAGCAAGCTGAAATTACCAAAAAAATTCATGGGGAAGCTAACATTCGATATGCTTGGCTTGCTTCTTCTAAAGGAGaactatctacaatgatgcagtatggacttggtcattgtggACTATCTAGATCAAAATGCACATATGGCATTGGTGTTCATCTTGCAGCTGATACCTGCCCTGATGCCAGTGTGCGTTTTTGTGATGTTGACGAAAATGGGGTTCGACACTTGGTCCTTTGCCGCGTAATAATGGGAAACATGGAGATTCTCCGTCCCGGCAGCAGTCAGTTTCATCCCAGTAGTTGTGAATATGATAATGGGGTGGATGACATTCAATGCCCAAAATGCTATGTGGTGTGGAATATGAACGTGAACACTCACATCTATCCAGAATTCGTACTTAGCTTCAAGGTCTCTTCTGATGCAGAAGGTCGATTTTATGGAAGTGAGGGTAAGAATGTTTCTGGGATTAATACAGCCTGTCACGGTCCTTATGGCCTGTTACAGTCAGAATCTTCTACAGTTGATAATGTAAAAGCTCCTAGTATGGTTGCTAGCACTCCAAAAATTCCAAAATCCCCTTGGATGCCTTTTCCTGTGCTTTTTGCTGCTATCAGGAATCAGGTTCCTCCCAAGGATATGATTCGTATCAAAGGACATTATGATCAATTCAGGTCAAAGCAGATATCCCGGGATGATTTTGTGAAGATGCTGAGGTTAATAGTTGGAGATGATCTGTTGAGAGCTACAATAACAAATCTTCAATTCAAGATACCATCCAATGGTGAATTGAAAGACTCAAACAAGCAGGAAGACTGA 1755 0.3852 MEAKSAKALDRVGLNLKRKRATRYAALLSGASQPALGHWPSFTSPTSRVVKRRRLGGYKNKLTNAGPHIGQSLVRRFLNYKKSGRLERLMFYKNGEWLDFPKDVVDLVKKDLEVKKKVAVEVELNGYHLVFNFFHLHKVDLKTGLQQPIAWIDEAGSCFFPEIYAASDEEPYDFVKQESGKSQESYESNEIKLHLEVEINGVDQSRLSECSGESNALVKGIQIDTKQNCCQYDVEVEDSINKKDCGNVGEAIQQNQDIGLDAYTELIYGNLDLNSVQKMFLKGMNSFGSTDSDIVEISHCSGASMQARWELFHKQAEITKKIHGEANIRYAWLASSKGELSTMMQYGLGHCGLSRSKCTYGIGVHLAADTCPDASVRFCDVDENGVRHLVLCRVIMGNMEILRPGSSQFHPSSCEYDNGVDDIQCPKCYVVWNMNVNTHIYPEFVLSFKVSSDAEGRFYGSEGKNVSGINTACHGPYGLLQSESSTVDNVKAPSMVASTPKIPKSPWMPFPVLFAAIRNQVPPKDMIRIKGHYDQFRSKQISRDDFVKMLRLIVGDDLLRATITNLQFKIPSNGELKDSNKQED 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00992 584 Pfam RCD1-SRO-TAF4 (RST) plant domain 503 567 IPR022003 -
Cca06g00992 584 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 1 570 IPR044964 -
Cca06g00992 584 ProSiteProfiles PARP catalytic domain profile. 250 468 IPR012317 GO:0003950
Cca06g00992 584 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO1-RELATED 1 570 - -
Cca06g00992 584 SUPERFAMILY ADP-ribosylation 267 449 - -
Cca06g00992 584 Gene3D - 265 450 - -
Cca06g00992 584 ProSiteProfiles RST domain profile. 501 572 IPR022003 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00992 Cca-Chr6 23635350 23638988 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00992 - - gmx:100797549 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00992 06 23635350 23638988 Cca06g00992 06 23635350 23638988 ECH