Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00983 ATGTCGATAAAAACTGTTAAAGTCGGTAATGTTTCCTTGGGAGCAACTGACCAAGACATTAAGGAGTTCTTTTCTTTTTCTGGTGATATTGAATATGTTGAACTACAGAGTCATGATGAACGATCTCAAATTGCTTATATTACCTTCAAGGATTCACAGGGAGCTGAGACTGCTGTACTGCTTTCGGGTGCAACAATAGTCGATATGCCAGTTACAATAACTCTGGAtccagattaccagcttccacctgctgccttagcttccagcAACGTAAGTCAAACTCCTGGTGGTGGTGAATCTGCTTTACGAAAGGCAGAGGATGTGGTCTCCGGCATGCTAGCCAAAGGCTTTATCTTAGGGAAAGATGCTGTCAACAAAGCAAAGACTTTTGACGAGAAGCACCAGTTAACGCACACAGCCTCAGCAAAAGTTGCATCTTTTGATCAGAAAATTGGGCTTAGCGAGAAAATAAGTGCTGGTGCTACAGTTGTGGGAGATAGAGTTCGAGAAGTGGACCAAAAGTTTCAGGTTTCAGAAAAGACCAAATCAGCATTTGCAGCTGCAGAACAGACAGTTAGTAATGCTGGTTCTGCCATAATGAAGAATCGCTATGTTCTTACTGGGGCCTCCTGGGTAACCGGTGCTTTTAATAAGGTTTCTAAGGCAGCTGGGGAAGTTGGACAGAAGACAAAAGAGAAAGTGGAGAATGCAGAAGAGCAACAGAAACGAAAAGTGGAAGATCAGTATGCACAGGTCCTTTCTGAGGCCCCAAAAGCAGCAGAAGCAAGTGAGAAGCAGCCTTCCAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 837 0.4182 MSIKTVKVGNVSLGATDQDIKEFFSFSGDIEYVELQSHDERSQIAYITFKDSQGAETAVLLSGATIVDMPVTITLDPDYQLPPAALASSNVSQTPGGGESALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLTHTASAKVASFDQKIGLSEKISAGATVVGDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSAIMKNRYVLTGASWVTGAFNKVSKAAGEVGQKTKEKVENAEEQQKRKVEDQYAQVLSEAPKAAEASEKQPSKPAPAQGLIL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00983 278 PANTHER BINDING PARTNER OF ACD11 1 1 263 - -
Cca06g00983 278 MobiDBLite consensus disorder prediction 226 249 - -
Cca06g00983 278 MobiDBLite consensus disorder prediction 226 278 - -
Cca06g00983 278 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 263 - -
Cca06g00983 278 Gene3D - 2 74 IPR012677 -
Cca06g00983 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Cca06g00983 278 SMART rrm1_1 5 74 IPR000504 GO:0003723
Cca06g00983 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Cca06g00983 278 Coils Coil 231 255 - -
Cca06g00983 278 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00983 Cca-Chr6 23593944 23597526 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00983 - - gmx:100797009 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00983 06 23593944 23597526 Cca06g00983 06 23593944 23597526 ECH