Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00975 ATGCTTTTATGGTGTGGTTTGCTCCGCCGCAAAGTCCATTCCCAACGCCAATGCTTTTTCAGGTTCCATTCTTCAGTTTCTTCTGCGCTGATGTTGGAAGACCACGTGTTTGATGAAAGTCCAAAATCCTATGCCAATTTTTTTATTAATATGCCTGCACCCCATGTTCCTACAACAAGGAGGGAGTTGTTTCCTTTAGTGGCTAGGGTGTTCAAATCACTGAGTTGGACTGTAGCAAGTGAAATAAGGTTTGGGAGTTGGGTTGAGAGTCATGGGTTTTCTCATTCAGTCAATTGCTTTAGGATTATTATTCATGTGTTTGCTTTGGCGGGGATGCGTTTGGAAGTGTTTGCTTTGCTTAGAGATGTTGTTGGGTTCTGTAGTGAGGCCAAGTATGATACCTTTGAATTGTTTTCAACTTTGCTGGATTCACCTCACCACGTGGAAAGATCCGCTGTTGTGTTTGATGTGCTCATAAAAGTGTTTGCATCCAACTCTATGCTGGAAAACGCTCTTGATGTGTTTGTGAATGCTAAGCATGTTGGACTTGAGCCTGATATAAGGGTTTGCAATTTCTTGTTGAAATGCTTGGTTGAAGCGAATAGACTGGAGTTTGTTGGATGGTTTTTTGAGAAATTGACGGCCTTTGGTCCGTTGCCAAATATCTACACCTATACAATCATGATGAATTTTTATTATAATGATGTTGGGTGTGATGCAGGTATGAGACGGGCTGCTGTGATGCTAGGAAAGATATATCTCAGTGGGGAAAAGCCGACTGTTGTTACGTATAGTACTTATATTCACGGACTTTGTAAAGTTGGTTGTGTTGAGGCTGCTCTGATGTTAATTCGCAACTTGCACTATGAAAACCAGCCTCTCAATAGTCATTCTTTTAATGCTGTAATTTATGGGTATTGTAAAAGAGGTGAAGTGTGTGAAGCTTTGCAAGTTTTGGATGAAATGAAGAGCTCTGGGATATTGCCAGATGTTTATAGCTACAGCATCTTAATTAATGCATTCTGCATGAAAGGGGATGTAGTAAAATGTCTTGATTTGATGGAGGAAATGGAACTCTCCCAGATAAAACCATCCATTGTTAGCTACACCTCCCTCATCCATGGTCTGTGCAAAAAGAATCTGATGCAAAATGCAGTGGATATATTCCATAGTATTGATGCTTCTAGTTGCAAGTATGATCAGACTGTTTATGAAACTTTAATTGATGGATTTTGCATACAAGGTGATGTGGATTCAGCCATCAAGCTTTTGAAGGAGATGATCAGCAATAATTTGGTTCCTACTGCTTTTAGTTGCCGCAGTCTAATTAGGGGATTCTGCAAACTGGGTCTGTTCCATCAGGCATTGGAAGTTTTTAATACCATGCTTCAAGATGGTATTTGGCCAGATACTATCACCTGCAATTATATTCTTGATGGATCTTGCAGGGAAGGGCACTTCAAAGAAGCCTTGACACTGTTGGAGGACTTCCAAGAACATGGATTTAACCTCAACCCTCATTCATATAATGCAATCATCTACAAACTTTGTAAAGAAAGTTATCCAGAAAGAGCATTGGAGCTCCTGCCAAGAATGCTTAAAAGGAATGTAATTCCTGCAGTTGTTAATTATAGTACTCTCATATCTGGCTTTGCCAAACAGTCGAATTTTAAAAAGGCTGTGATCTTATTCACAAAAATGGTAAAAGATGGGATCAGTTTCAACGCTGCCACATATACAATTCTTATTAGCATATTTAGCCGTAATCGCAAAATGCATGAAGCATATGGCATTTTTAAGGAAATGAGAGAAAGGGGATTGCGTCCAGATCAGATTTCATATACAACTTTAATAGCTGGATTTTGTAATAACAGAGAAATGAAGAAAGCCTGGGCATTATTTGAAGAAATGTCGAGGGAAGGCTGTTTGCCAAATGTAATTACTTATACTTGTTTGATTGATGGATTCTGCAAATCAAACCGGATAGATTTGGCCACCTGGCTGTTTGATAAAATGAACAGAGATTCAGTTATTCCTGATGTTGTAACTTACACTGTCCTCATTGCTTGGTACCATAAGCATGGGTCTAAAAGCTGGTGCAATTCAAGAAGGCTAGGCAGCTGTATCAAAGCTTCCTTGATATCCAGCTGGTCAAGAAGATGA 2163 0.3948 MLLWCGLLRRKVHSQRQCFFRFHSSVSSALMLEDHVFDESPKSYANFFINMPAPHVPTTRRELFPLVARVFKSLSWTVASEIRFGSWVESHGFSHSVNCFRIIIHVFALAGMRLEVFALLRDVVGFCSEAKYDTFELFSTLLDSPHHVERSAVVFDVLIKVFASNSMLENALDVFVNAKHVGLEPDIRVCNFLLKCLVEANRLEFVGWFFEKLTAFGPLPNIYTYTIMMNFYYNDVGCDAGMRRAAVMLGKIYLSGEKPTVVTYSTYIHGLCKVGCVEAALMLIRNLHYENQPLNSHSFNAVIYGYCKRGEVCEALQVLDEMKSSGILPDVYSYSILINAFCMKGDVVKCLDLMEEMELSQIKPSIVSYTSLIHGLCKKNLMQNAVDIFHSIDASSCKYDQTVYETLIDGFCIQGDVDSAIKLLKEMISNNLVPTAFSCRSLIRGFCKLGLFHQALEVFNTMLQDGIWPDTITCNYILDGSCREGHFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKESYPERALELLPRMLKRNVIPAVVNYSTLISGFAKQSNFKKAVILFTKMVKDGISFNAATYTILISIFSRNRKMHEAYGIFKEMRERGLRPDQISYTTLIAGFCNNREMKKAWALFEEMSREGCLPNVITYTCLIDGFCKSNRIDLATWLFDKMNRDSVIPDVVTYTVLIAWYHKHGSKSWCNSRRLGSCIKASLISSWSRR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00975 720 Gene3D Tetratricopeptide repeat domain 81 242 IPR011990 GO:0005515
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 574 IPR002885 -
Cca06g00975 720 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 3 698 - -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 645 679 IPR002885 -
Cca06g00975 720 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 698 - -
Cca06g00975 720 Gene3D Tetratricopeptide repeat domain 358 429 IPR011990 GO:0005515
Cca06g00975 720 Gene3D Tetratricopeptide repeat domain 430 500 IPR011990 GO:0005515
Cca06g00975 720 Gene3D Tetratricopeptide repeat domain 501 566 IPR011990 GO:0005515
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 610 644 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Cca06g00975 720 SUPERFAMILY HCP-like 414 634 - -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Cca06g00975 720 Pfam PPR repeat family 609 658 IPR002885 -
Cca06g00975 720 Pfam PPR repeat family 539 584 IPR002885 -
Cca06g00975 720 Pfam PPR repeat family 295 342 IPR002885 -
Cca06g00975 720 Pfam PPR repeat family 469 518 IPR002885 -
Cca06g00975 720 Pfam PPR repeat family 402 448 IPR002885 -
Cca06g00975 720 Pfam PPR repeat 256 284 IPR002885 -
Cca06g00975 720 Pfam PPR repeat 362 390 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 578 610 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 438 470 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 544 575 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 298 331 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 403 435 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 647 681 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 262 285 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 612 646 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 507 539 IPR002885 -
Cca06g00975 720 TIGRFAM PPR: pentatricopeptide repeat domain 332 365 IPR002885 -
Cca06g00975 720 Gene3D Tetratricopeptide repeat domain 567 717 IPR011990 GO:0005515
Cca06g00975 720 Gene3D Tetratricopeptide repeat domain 243 357 IPR011990 GO:0005515
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Cca06g00975 720 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00975 242 705 Glycosyltransferase AT1G05670 30.687 1.83e-66 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00975 - - gmx:100818511 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00975 06 23529041 23531959 Cca06g00975 06 23529041 23531959 ECH