Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00953 ATGTGTCTCTCACTGCCTTCGCCCGCTGACGCCGCAGGGGAGCCGGTGGATGCTCCTCCCGCACCGAATCTCTTTCTCCAAACCCTAGAAAACGCCGAATCGGCCGCTGATTTTGACGGATATTCCGGTGTGTCGCCGGCCGACGGCGCTTCCGTTCTTTCGGCGGGTTCTGGTCAGGGCGGCGTGTCTTCGCCGGTGCGGCAGCTCAACGACGGCTCGTCTTCGCGGTGGTCGCATGACTTGGCTTTGAATTCCGCGGTGGCGCCGGAAGCGTGGAGTGCTCCCCAAGAAAACTGGCTCTTACCTGCAAACGACGGTCCAGTGGGCGGAGAATCCGCCTCTGAAGTTGTGCCTACCAAGATGGGAGCTGGGCTTTCAAATCTTGGCAACACGTGCTTTCTTAATTCTATCCTGCAATGTTTTACGCACACGGTGCCTCTAGTGCAGGGTCTTCGTTCCTGCATTCATTCTTCTCCTTGTGATGGTTATATGGATGGGTTCTGTGTTATTTGTGCTCTTCGAGACCAGGTTGAAAGTTCCTTAGCGGCTTCAGGAAGGACTCTTTCACCTTTGAAATTTGTGGACAATTTGAACTATTTTTCCTCTGCATTTGGAAGATACCAGCAAGAGGATGCCCATGAGTTTATGCAGTGTGCCTTGGATAAACTGGAAAGAGGTTTCCTAGATTTGAGGAAGAATAATTTAAATTTTGAGGGTGATAATCTTGTAGAGAAAGTATTTGGAGGTCGTCTCATTAGCAAACTTCAATGCTGTCGCTGTGGCCACACTTCTGATACTTATGAGCCATTGATTGATATGAGTTTAGAGATAGAAAATGTAGATTGTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAACATTGATGCAAACATTAGATGTGATAACTGCAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATCAGACGCCATCAGTTGCAGCATTTCATCTGAAGAGATTCAAGACAGATGGTGTCCTTGTTGAAAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCCTATACTATTTCTAATCAAAACAATGATGTACCGTTGAAATATAATTTATATGCCATTGTTGTGCATATTGGCTTTTCGTCTACTTCAGGGCATTATTTCTGCTTTGTTCGCTCTGCTCCCAACACATGGCATAAGATGGATGATTCAATGGTTACTGAGGTCTCGGGGGATTCTGTACTGTCTCAGGAAGCATACATATTGTTTTATGCACGAGAGGGTACTCCATGGTTTTCGAGTATTATGGAATCTCAAACACAATGCTCGGATCCAAATGTTTTGAGTACATCTCCTAAGTCTGTTTTAGACGTTGGTGACAGCATGTGCAAATCAAATCCTATTATAATTTCAAATATTGAAAGAGGTGGGGCTGGTGAATACACTGATTGTCCTGGGCCACAGTTTGATTGTCAAGAAAGACATACTATTCTTGAAATGAATGACACTACAAATTCTACTCATGGCCGGGGAAGATTTATCTCTGGGTCAAATAATAAAAGCGTTGATTTAAATGGCTCTAAAAGTGTTGATGCCCAAGTGTTGAATATGGAGAATGAAATATTGAATGGCAGTGACATATTTGATGGAAATTCATATATGGGGATTGGCGGTCAAGATAATAACTTGAACTGTCAAGAAGTTGTCGATTTTAGAGAGAATGATGGTTTCCATTCCATAACTCCGCCCAGCTCCCCTCGTGATGATTCTCCAGATCAGTTTAATATCTCACGTGATCATTTGAAGAGGGAGAAGCATGGGAGCTGTAAAAGAGCATCAAATATGTTAGCTGGGGATTCTGAAAGACAAGCAGCCATGAAATATCTCAACAATACCAAGATGCCTGGTTCCAGGAGAGGGGCACTTTTGCAATTTGTTAGTCCAAAAGAATCTGTGGACAAGAAGAGAAAACATATGGATTCATCGCAATGTAAAAAAAGCAACTCACTTGGTGATCGTAAAAAACCAAACCATACATCTGTCAGTCGCCCTGTGGCAGCTGGAATTTCACAGTGA 2076 0.4383 MCLSLPSPADAAGEPVDAPPAPNLFLQTLENAESAADFDGYSGVSPADGASVLSAGSGQGGVSSPVRQLNDGSSSRWSHDLALNSAVAPEAWSAPQENWLLPANDGPVGGESASEVVPTKMGAGLSNLGNTCFLNSILQCFTHTVPLVQGLRSCIHSSPCDGYMDGFCVICALRDQVESSLAASGRTLSPLKFVDNLNYFSSAFGRYQQEDAHEFMQCALDKLERGFLDLRKNNLNFEGDNLVEKVFGGRLISKLQCCRCGHTSDTYEPLIDMSLEIENVDCLPSALESFTKVENIDANIRCDNCKEEVSMEKQLMLDQTPSVAAFHLKRFKTDGVLVEKIDKHIDFPLELDLQPYTISNQNNDVPLKYNLYAIVVHIGFSSTSGHYFCFVRSAPNTWHKMDDSMVTEVSGDSVLSQEAYILFYAREGTPWFSSIMESQTQCSDPNVLSTSPKSVLDVGDSMCKSNPIIISNIERGGAGEYTDCPGPQFDCQERHTILEMNDTTNSTHGRGRFISGSNNKSVDLNGSKSVDAQVLNMENEILNGSDIFDGNSYMGIGGQDNNLNCQEVVDFRENDGFHSITPPSSPRDDSPDQFNISRDHLKREKHGSCKRASNMLAGDSERQAAMKYLNNTKMPGSRRGALLQFVSPKESVDKKRKHMDSSQCKKSNSLGDRKKPNHTSVSRPVAAGISQ 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00953 691 MobiDBLite consensus disorder prediction 52 73 - -
Cca06g00953 691 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 124 139 IPR018200 GO:0004843|GO:0006511
Cca06g00953 691 MobiDBLite consensus disorder prediction 646 691 - -
Cca06g00953 691 Gene3D Cysteine proteinases 119 428 - -
Cca06g00953 691 MobiDBLite consensus disorder prediction 575 595 - -
Cca06g00953 691 Pfam Ubiquitin carboxyl-terminal hydrolase 124 424 IPR001394 GO:0004843|GO:0016579
Cca06g00953 691 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 123 427 IPR028889 -
Cca06g00953 691 MobiDBLite consensus disorder prediction 56 73 - -
Cca06g00953 691 MobiDBLite consensus disorder prediction 649 679 - -
Cca06g00953 691 MobiDBLite consensus disorder prediction 1 22 - -
Cca06g00953 691 SUPERFAMILY Cysteine proteinases 122 426 IPR038765 -
Cca06g00953 691 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 369 387 IPR018200 GO:0004843|GO:0006511
Cca06g00953 691 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 117 476 - -
Cca06g00953 691 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 117 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00953 Cca-Chr6 23245106 23249289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00953 118 441 Miscellaneous Gene Families AT4G31670 33.923 4.62e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00953 K11855 - gmx:100808015 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00953 06 23245106 23249289 Cca06g00953 06 23245106 23249289 ECH