Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00906 ATGCAAGACTCCGATCAGCGCCACCACCACACCGAAACGACGCCGTCGCCTAAGCGAAACGCGCGACCCAAGCGCCCCGTCTTCAAGCTCCGCCGAGAGACCGGCTGCAAAATCCACTGCGAGGACTCCGTCGCCGCCACCGAGGACCGCGTCATCCTCGTCATCGGATCGCTCTCGCCGCGCAAGGGCCTCCAACTCGGCGACGGCGAAGTTGACGTCTCCAACGCGCAGGAAGCCGTCGTTAGGGTTTTCGAGAGGGTTTGGGAGCTCGAGGCCGAGAAAGGCGTTAACTCTAACAGACCCGTTAACGGCGAGGTTTTTTCCAAGTTGCTCGCGCACACTTCGCAGATTGGCGCTGTTGTTGGCAAAGGAGGGAAGAACATAACCGCTATTAGGAACAGCAGCGGTGCCAAAATTAGGGTTTGCCCTCCTCCGCATTGCGCTACTAAAGACGAGGAGTTAGTTCAAATAACTGGTGAAGTTTTGGCTGTGAAGAAAGCGCTGATTGCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTATGCAAAGTTCCAGTTTCTTCTAGTACACCAACTGTTAGTTCTTCTGATTGGTCGTCCTCTGATCCCAATGCTGAACTTTTTCCTCACCTTAACTCATTGTTAACCTCCATGGAAGGTTTATCTATGTATGAACGGACCACAAACTCTAATGAAACCTCTGCCCATGACTCCAAAGGTGCAGAACATGAAGTTGTGTTCAGACTCCTTTGCTCCAATAATGTAGCTGGGAGCGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGCAAAACAGGTGCTTCTATTATCTTTGCAGCTCCTTTAAGCGAGTTTGCTGAGCGCATTGTCACCATTTCTGCTGTAGAGAACCTTGAATCTTGTTATTCTCCTGCACAAGATGCTGTTATTCATGTCTTTGCTAGAATTATTGAAGATCACATAGGAAAGGGTTTTCTCCCAGTCTCTAGTATGGAATCACCTGTAACTGCAAGACTTTTAGTTGCAACAAGCACAGTAAATTGCTTGAGTGGCAATGAAGGTCAGGGGATTTCAGAATTGAGGGAAGTAACAGGAGCTGATATACAAATTTTGCATGGAGAGCCCGTTCCTAATGGTGCCTCAGATGATGATGTGGTGGTGCAGATCACTGGAGGGTACAGATGTGTACAGAATGCCCTATATAAAGTTACTTGTAGAATCAGGGATAATCATTTGCCCAATGAAGCGGTTGCTGAAGCAAGACCGAAATCCAATTGGAAAGTGAATAAGGATCCTGTAAAGGGTAAACCTTTTGCCCGTGGAAAATCTGCTTTTCCTTCTGGGAGGTTTTTGCCACGGAATGCAGGGGTGAATGCTGAAACAATATCACAAAATGGAGAATTACATACGGATTTAAGTGAGAATTTGGAACGTGGGAGGGGAAACATGTTTGCTACAGTTACAAATACTACTGTGGAGATTGTAGTTTCTGAACATGTCTTTGGTTCTGTTTATGGTGAAGACGGTGGCAATTTGGATCGAATCAGACAGATTTCAGGTGCAAGTGTTACGGTTTATGATCCCTCCGCTGGTTCAAGTGGAGGAAAAGTTGTCATATCTGGGACACCTGATCAAACCTTTGCAGCACAGAGCTTGCTACAAGCCTTTATTCAAACTGGACACGTAAGCTGA 1698 0.4706 MQDSDQRHHHTETTPSPKRNARPKRPVFKLRRETGCKIHCEDSVAATEDRVILVIGSLSPRKGLQLGDGEVDVSNAQEAVVRVFERVWELEAEKGVNSNRPVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRNSSGAKIRVCPPPHCATKDEELVQITGEVLAVKKALIAVSHCLQDCPPLCKVPVSSSTPTVSSSDWSSSDPNAELFPHLNSLLTSMEGLSMYERTTNSNETSAHDSKGAEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEFAERIVTISAVENLESCYSPAQDAVIHVFARIIEDHIGKGFLPVSSMESPVTARLLVATSTVNCLSGNEGQGISELREVTGADIQILHGEPVPNGASDDDVVVQITGGYRCVQNALYKVTCRIRDNHLPNEAVAEARPKSNWKVNKDPVKGKPFARGKSAFPSGRFLPRNAGVNAETISQNGELHTDLSENLERGRGNMFATVTNTTVEIVVSEHVFGSVYGEDGGNLDRIRQISGASVTVYDPSAGSSGGKVVISGTPDQTFAAQSLLQAFIQTGHVS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00906 565 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 491 560 IPR036612 GO:0003723
Cca06g00906 565 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 244 327 IPR036612 GO:0003723
Cca06g00906 565 CDD PCBP_like_KH 109 172 - -
Cca06g00906 565 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 98 179 IPR036612 GO:0003723
Cca06g00906 565 ProSiteProfiles Type-1 KH domain profile. 336 405 - -
Cca06g00906 565 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 29 438 - -
Cca06g00906 565 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 29 438 - -
Cca06g00906 565 Pfam KH domain 247 296 IPR004088 GO:0003723
Cca06g00906 565 Pfam KH domain 493 556 IPR004088 GO:0003723
Cca06g00906 565 Pfam KH domain 338 405 IPR004088 GO:0003723
Cca06g00906 565 Pfam KH domain 110 171 IPR004088 GO:0003723
Cca06g00906 565 MobiDBLite consensus disorder prediction 1 19 - -
Cca06g00906 565 Gene3D - 243 414 - -
Cca06g00906 565 Gene3D - 26 180 - -
Cca06g00906 565 ProSiteProfiles Type-1 KH domain profile. 491 555 - -
Cca06g00906 565 CDD PCBP_like_KH 246 315 - -
Cca06g00906 565 ProSiteProfiles Type-1 KH domain profile. 105 171 - -
Cca06g00906 565 CDD KH-I 493 556 - -
Cca06g00906 565 MobiDBLite consensus disorder prediction 1 27 - -
Cca06g00906 565 Gene3D K Homology domain, type 1 488 562 IPR036612 GO:0003723
Cca06g00906 565 ProSiteProfiles Type-1 KH domain profile. 244 311 - -
Cca06g00906 565 SMART kh_6 104 176 IPR004087 GO:0003676
Cca06g00906 565 SMART kh_6 335 410 IPR004087 GO:0003676
Cca06g00906 565 SMART kh_6 243 319 IPR004087 GO:0003676
Cca06g00906 565 SMART kh_6 490 560 IPR004087 GO:0003676
Cca06g00906 565 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 330 412 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00906 Cca-Chr6 22588507 22592886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00906 K21444 - gmx:100793130 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00906 06 22588507 22592886 Cca06g00906 06 22588507 22592886 ECH