Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00865 ATGAAGTTCATGAAACTGGGATCTCGTCCTGATACATTCTACACTGCAGAGGCAGTAAGGTCAGTCTCTTCTGAAGTTTCCAGCGACCTCATAATTCAGGTTAAGGGAAGTAGGTATCTTCTTCACAAGTTTCCCTTGCTGTCCAAGTGTTTGAGGCTGCAAAAGTTATGTTCAGAGTCTCCTGATTCTTCTTCTCAGCACCAAGTAGTCCAACTCGCTGATTTCCCTGGTGGGGTGGAGGCATTTGAGTTGTGTGCTAAGTTCTGCTATGGAATAACCATCACTCTGAGTCCTTACAACATTGTGGCTGCACGATGTAGTGCTGAGTACCTGCAGATGACGGAGGAGGTTGAGAAGGGGAACTTAATTCAGAAGCTTGAGGTTTTCTTTAACTCATGCATTCTACGTGGCTGGAAGGATTCTATTGTGAGTCTTCAGACCACAAAAGCGTTGCCTATGTGGTCAGAGGACTTGGGAATTACCAGCAGGTGCATTGAAGCTGTTGCAGCAAAAGTTCTAAGCCACCCCTCTAAGGTTTGTTTGTCACATAGCCATTCCCGAAGAGTGAGGGATGATGTGTCTTGCAATGGCACCGAGAGTCTGAGGCATAACAAGTCAGGAAACAAGGGATGGTGGGGTGAAGATTTGGCAGAACTCAGCATAGACCTGTATTGGAGAACCATGATAGCAATCAAATCTGGTGGCAAGATTCCCTCAAACCTCATTGGAGATGCATTAAAAATCTATGCATCTCGGTGGCTACCTAATGTTACCAGCAATGGACACCTCAAGAAGCAAGCTGTTTCTGACTCAGACTCGGAGTCAGTTAGTGAAGTAACTTCAAAGCATCGTCTGCTTTTGGAGTCACTAGTGAGCTTGCTTCCAGCTGAGAAAGGTGCTGTTTCTTGTGGCTTCCTTTTGAAGCTCTTGAAGGCATCCAATATTCTTAATGCTTCTTCATCTTCTAAGATGGAATTGGCAAGAAGGGTAGGGCTTCAATTGGAGGAGGCCACTGTGAATGATCTTTTGATACCCTCACTTTCTCGCACAAATGATACAGTGTATGATGTTGAGTTGGTGATGACCATATTGGAGCAGTTTATGGCACAAGGGCAGAGCCCTCCAACTAGCCCTGCGAGATCCAGGATGGCCTTTGAAAGAAGGAGGTCTCGTTCAGCTGAGAATATTAACTTAGAATTTCAAGAGAGTAGGAGGTCCTCTTCTGCATCTCACAGTTCGAAATTGAAGGTTGCAAAGCTTGTGGATAGGTATCTTCAAGAAGTTGCCAGAGATGTGAATTTTCACTTGTCGAAATTCATTGCCCTGGCTGAGATTATACCAGATTTTGCAAGACATGATCATGATGATCTCTACAGAGCTATTGACATTTATCTGAAGGCTCATCCAGAACTCAACAAAAGTGAAAGGAAGAGATTGTGTCGAATTCTTGACTGCAAAAAACTGTCTATGGAAGCTTGCATGCATGCAGCACAAAATGAGCTACTTCCTCTGCGTGTTGTAGTTCAAGTTCTCTTCTTTGATCAAGCTAGAGCAGCAGCAGCTGGTGGCAAAGTGACTGACTTACCAGCCAATATCAAGGCATTACTCACTGCACATGGTATTGACCCATCAAAACATGCAGCACCATTAAGCACCACTACAAGTATACATGCTGAGGACAATTGGAGTGTTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGCTAGCTGAAGATGATGATTTCAATCAAAATGGTTTGCCACCTGATGGAATTGGAAGGAATTCTAGATTTAAGGCCATATGTGCTATTCCAACCCAACCCAAAAAAATGCTTAGTAAGTTCTGGTCTGCCAATAGAACTACCACTGAAAAGAATCGAGTGAAATCTGTTTAA 1911 0.4385 MKFMKLGSRPDTFYTAEAVRSVSSEVSSDLIIQVKGSRYLLHKFPLLSKCLRLQKLCSESPDSSSQHQVVQLADFPGGVEAFELCAKFCYGITITLSPYNIVAARCSAEYLQMTEEVEKGNLIQKLEVFFNSCILRGWKDSIVSLQTTKALPMWSEDLGITSRCIEAVAAKVLSHPSKVCLSHSHSRRVRDDVSCNGTESLRHNKSGNKGWWGEDLAELSIDLYWRTMIAIKSGGKIPSNLIGDALKIYASRWLPNVTSNGHLKKQAVSDSDSESVSEVTSKHRLLLESLVSLLPAEKGAVSCGFLLKLLKASNILNASSSSKMELARRVGLQLEEATVNDLLIPSLSRTNDTVYDVELVMTILEQFMAQGQSPPTSPARSRMAFERRRSRSAENINLEFQESRRSSSASHSSKLKVAKLVDRYLQEVARDVNFHLSKFIALAEIIPDFARHDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFDQARAAAAGGKVTDLPANIKALLTAHGIDPSKHAAPLSTTTSIHAEDNWSVSGFKSPKSRSSTLRMKLAEDDDFNQNGLPPDGIGRNSRFKAICAIPTQPKKMLSKFWSANRTTTEKNRVKSV 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00865 636 Pfam NPH3 family 211 493 IPR027356 -
Cca06g00865 636 Gene3D Potassium Channel Kv1.1; Chain A 15 123 IPR011333 -
Cca06g00865 636 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 629 - -
Cca06g00865 636 ProSiteProfiles NPH3 domain profile. 210 517 IPR027356 -
Cca06g00865 636 SUPERFAMILY POZ domain 21 117 IPR011333 -
Cca06g00865 636 PANTHER OS12G0117600 PROTEIN 1 629 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00865 Cca-Chr6 21883654 21887204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00865 26 541 EF-hand Containing Proteins AT3G44820 34.637 5.45e-92 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00865 - - gmx:100797361 1128.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00865 06 21883654 21887204 Cca06g00865 06 21883654 21887204 ECH