Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00842 ATGAAGAGGCACAGAAGTTTTTCCTCACTTTTTTTCCTGTCTTTGTTGGTGATTATCTTTGTCACATTCTCTATAATTTCTGCGGAAGCAAGGAAGACTAATATCAAGAGAAAACTTCACAAACGTCACAAAGGTAGTCATAGTAGCAATGGTCACACTGGAGGATCACATTCTCCATGTCCAACGCCAACCCCTCTTCCTCATTATGGTCCTCAAGGGAGTACCTTTGATGTTTTATCTTTTGGCGCCAAGGGCAATGGAGTTTCTGATGATTCAGAGGCACTTGTAGCTGCATGGAATGGTGCATGTAAAGTTGCTGGTGCTACAGTTAAAATTCCAGCACAACTCAAGTTCCTCATCAAACCTGTCACTTTGCAAGGCCCTTGTATGCCTGACCTTACTCTTCAGATAGATGGAACTCTATTGGCACCTCCTGAAGCATCTTCCTGGCCAAAATCAAATTTGTTTCAGTGGATAAATTTCAAGTGGGTCCAGAACTTTACCGTTAAAGGCTCTGGCATTGTAGATGGCCAAGGCAATAACTGGTGGAGCTCCTCAGAATTTTATGACACACAGAAGAAGAGCTACTCCAAACAAATTCCAGGCATTAAACCAACTGCTATAAGATTCTACTCCAGCAACTTGGTCACAGTTCGCGATATCAGAATCATAAACAGTCCTTTGTGCCATCTAAAATTTGACAACTCAAAGGGGATCAAAGTTGACAACATTACAATTTTCTCCCCAGAGAATAGCCCAAACACTGATGGCATTCACTTACAGAACACACAAGACGCAGAAATTCAACGTTCTATCATTGGAACAGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAATTGTGGCCCTGGACATGGCATAAGTTTGGGAGGATTAGGAAAAGACAAGAGTGCGGCATGTGTCTCTGACATCATTGTTGAGGATATCTCTATGAAAAACACTCTATATGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGTATGGTTAAAAATGTGTCATTTTCAAGAATCCAAGTCTATGATGTTATGTTTCCGATTATGATTGACCAATACTATTGTGACAAGCAAATCTGCAAGAACCACACAGGCACTGTGGTGATTTCTGGTGTTAAGTTTGATCAAATAAGTGGGACTTATGGTATGCAGCCTGTTCATCTAGCTTGCAGCAATTCCATACCCTGCACAGATATTAATTTAACAGACATTCAACTGAGTCCCTCCCTTAAATACCGAGGGTTGCAACAAGCTGTGTGTTGGAACTCTTATGGAAAATCACAAGGCCACTTACTACCTTCAAGCATTGATTATTGTTTGAGAAGTGGTGGGGGATTGATCAAGAGGATAGCAAGGTCACATGATAGAGTGTGTAACTAA 1422 0.4149 MKRHRSFSSLFFLSLLVIIFVTFSIISAEARKTNIKRKLHKRHKGSHSSNGHTGGSHSPCPTPTPLPHYGPQGSTFDVLSFGAKGNGVSDDSEALVAAWNGACKVAGATVKIPAQLKFLIKPVTLQGPCMPDLTLQIDGTLLAPPEASSWPKSNLFQWINFKWVQNFTVKGSGIVDGQGNNWWSSSEFYDTQKKSYSKQIPGIKPTAIRFYSSNLVTVRDIRIINSPLCHLKFDNSKGIKVDNITIFSPENSPNTDGIHLQNTQDAEIQRSIIGTGDDCVSIQTGCSNIHVHHINCGPGHGISLGGLGKDKSAACVSDIIVEDISMKNTLYGARIKTWQGGIGMVKNVSFSRIQVYDVMFPIMIDQYYCDKQICKNHTGTVVISGVKFDQISGTYGMQPVHLACSNSIPCTDINLTDIQLSPSLKYRGLQQAVCWNSYGKSQGHLLPSSIDYCLRSGGGLIKRIARSHDRVCN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00842 473 Pfam Glycosyl hydrolases family 28 108 423 IPR000743 GO:0004650|GO:0005975
Cca06g00842 473 MobiDBLite consensus disorder prediction 36 67 - -
Cca06g00842 473 Gene3D - 68 452 IPR012334 -
Cca06g00842 473 SUPERFAMILY Pectin lyase-like 69 450 IPR011050 -
Cca06g00842 473 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 19 461 - -
Cca06g00842 473 PANTHER - 19 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00842 Cca-Chr6 21554686 21557533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00842 1 472 Glycoside Hydrolase AT3G26610 59.375 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00842 K01213 - gmx:100803027 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00842 06 21554686 21557533 Cca06g00842 06 21554686 21557533 ECH