Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00833 ATGGCATTGGCAGTGGCACCAGAAGAAGCACCCATCCACGGCGATATATTAGAGGCCATATTCTCCCACGTGCCACTCATCCACCTCGTGCCAGCCTCCCACGTGTCAAAGTCCTGGAAGCGTGCGGTGTTCTCCTCCCTCGCCCACATCAGCCCCATAAAGCCATGGCTCATAGTCCTCACTCAGAGCCCCCGCGCCTCGCACGTGACAACGCTACACGCTTACGACCCCCGCTCGCACGTGTGGCTCCAGATAAAAAGCGCCACGTCCCACACCTCCCCCGTGCGCTCCTCCCACTCCACCTTGCTCTACACGCTCACCCCCGCCGAGTTCGCCTTCTCCCTCGACGCGCTCCACCTCCACTGGCACCACGCGCCGGCCCCGCGCGTGTGGCGCACCGACCCCATCGTCGCGCGCGTCGGGACGCGCGTGGTGGTGTCCGGCGGCGCGTGCGAGTTCGAGAACGACCCGCTCGCGGTGGAGGTCTACGACGCGCAGAGCCGCGCGTGGGAGACGTGCGAGTCCATGCCGGCGCTGCTGAAGGGCTCCACGGCGTCTTCGTGGCTGTCGGTGGCGGTGGCCGGAGGAATGATGCACGTGACGGAGAAATTCTCCGGCGTGACCTATTCCTTCGATCCTGTAATGAAAAATTGGAGGGGACCTTTCGATTTGAGACCTGATGAGAGTGTTTGCTACTGCCTGTGGGAGGTTCGGGGGGGATTAGGTTCGGGGATGGAGGAAGTGGCTGAGATGCCGAAGGAGATGGTTCGGAGGTTAATGGGAGGTTCGGAGTTAGGTTCGGTGGAGGTGACGTGGATTGGGGATTTTGTGTACGTGAGGAACACTTCCTTAGCGGAGGAGTTCGTGGTGTGTGAGTTTATCGATGGGGTCCGGTCCGAGTGGCGGAGTGTGACCAACGCCGCCGTTAGCCACGGCAGGAGAATGGTGGTTTGCGGCGGCGATGTGTGCATGGAGGATCTGTCGGAGAATCGAACATTGTGCATGAAACAAGTGTGA 1017 0.6136 MALAVAPEEAPIHGDILEAIFSHVPLIHLVPASHVSKSWKRAVFSSLAHISPIKPWLIVLTQSPRASHVTTLHAYDPRSHVWLQIKSATSHTSPVRSSHSTLLYTLTPAEFAFSLDALHLHWHHAPAPRVWRTDPIVARVGTRVVVSGGACEFENDPLAVEVYDAQSRAWETCESMPALLKGSTASSWLSVAVAGGMMHVTEKFSGVTYSFDPVMKNWRGPFDLRPDESVCYCLWEVRGGLGSGMEEVAEMPKEMVRRLMGGSELGSVEVTWIGDFVYVRNTSLAEEFVVCEFIDGVRSEWRSVTNAAVSHGRRMVVCGGDVCMEDLSENRTLCMKQV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00833 338 SUPERFAMILY Kelch motif 55 321 IPR015915 GO:0005515
Cca06g00833 338 Gene3D - 54 336 IPR015915 GO:0005515
Cca06g00833 338 Pfam F-box domain 15 43 IPR001810 GO:0005515
Cca06g00833 338 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 8 330 - -
Cca06g00833 338 Gene3D - 12 47 - -
Cca06g00833 338 PANTHER KELCH REPEAT-CONTAINING F-BOX-LIKE PROTEIN 8 330 - -
Cca06g00833 338 SUPERFAMILY F-box domain 15 46 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00833 Cca-Chr6 21409730 21411374 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00833 - - ccaj:109800389 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00833 06 21409730 21411374 Cca06g00833 06 21409730 21411374 ECH