Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00827 ATGTTGGGAGGCAACAATGGAAATCGTGCACTTCCTGTTTTCTTGGATGATACTCAATTTCGGCATCAAACAAATGTGTCAAATCAATTGCAGTTGTTTGGAAATTTACAAGCTGGATGTAATGTTGACCCAGTTAATAACTTTGGAAATGAGCACATCAACTCCATGGTTCAGCCTAATAAACGAAGCAGGGAAGTGGAAGATATATCAAAACAGAGGCTTCAGATTTCCTTAAATTACAATTTCCTTCAAGATGATGCTGATCGATTAGCAAGTATTCCAAATCCTAACCCTGTATCAACTGGATTGAGACTTTCATACGAAGATGATGAGCATAACTCATCTGTTACTTCTGCAAGTGGCAGCATGACTGCCACACCATCTATCGTATTGTCTCTTGGTGACAACATCAGAACTGAGCTTGATAGGCAGCAAGAGGAGTTGGACCAGTATATGAAACTTCAGAAGGAACAATTGTCAAAGGGAGTGAGAGACATGAAGCAAAAGCACATGGCTGCTCTGCTTACCTCCATTGAGAAAGGTATTAGCGCCAAACTAAAGGAAAAAGAAGTGGAGATAGAAAACATGAATCGAAAAAACAGGGAGCTGGCAGAAAGAATAAAGCAGGTGGCTATTGAAGCACAAAGCTGGCATTACAGAGCAAAGTACAATGAGTCAGTTGTGAATGTATTAAGGAACAACCTACAGCAGGCAATTTCACAAGGAGCTGAACAAGGGAAGGAAGGGTTTGGAGATAGTGAAGTTGATGATGATGCCTCATATATAGATCCTAATAACTTCCTGAACATTCCAGGTGCCCCTATAAACCCTACATACAAGAGCCACCAAGATATGGAAAATCTGACTTGCAGAGCATGCAAGACAAAGGAGGTTTCCATTTTGTTGATACCTTGTAGGCACCTGTGCCTGTGTAAGGATTGTGAGGGATTTATCCGTGTTTGTCCTGTGTGCCAATCGATAAAAACTGCAGGTGTCGAGGTGTATCTGTCTTAA 1014 0.4122 MLGGNNGNRALPVFLDDTQFRHQTNVSNQLQLFGNLQAGCNVDPVNNFGNEHINSMVQPNKRSREVEDISKQRLQISLNYNFLQDDADRLASIPNPNPVSTGLRLSYEDDEHNSSVTSASGSMTATPSIVLSLGDNIRTELDRQQEELDQYMKLQKEQLSKGVRDMKQKHMAALLTSIEKGISAKLKEKEVEIENMNRKNRELAERIKQVAIEAQSWHYRAKYNESVVNVLRNNLQQAISQGAEQGKEGFGDSEVDDDASYIDPNNFLNIPGAPINPTYKSHQDMENLTCRACKTKEVSILLIPCRHLCLCKDCEGFIRVCPVCQSIKTAGVEVYLS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00827 337 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 336 IPR017066 -
Cca06g00827 337 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 336 - -
Cca06g00827 337 ProSiteProfiles Zinc finger RING-type profile. 290 325 IPR001841 -
Cca06g00827 337 Coils Coil 134 161 - -
Cca06g00827 337 Pfam Zinc finger, C3HC4 type (RING finger) 287 326 - -
Cca06g00827 337 Coils Coil 179 213 - -
Cca06g00827 337 PIRSF SBP1_RNase_bind 1 337 IPR017066 -
Cca06g00827 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00827 Cca-Chr6 21288846 21293867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00827 290 326 Miscellaneous Gene Families AT2G21380 40.541 7.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00827 K19042 - gmx:100791550 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00827 06 21288846 21293867 Cca06g00827 06 21288846 21293867 ECH