Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00820 ATGTACAAACGTTCTAATGAAGAACAGGATGTAAGTAATGAGAAGGTTAGAAACTGTGATACAGCAGAAAGCAGTTTTCAGAGCTTGAGAATCAATGATTTGGACCCATCTGGGATTTCATCATTCCAATTGGGAAATTTGAGTACTAGTTGTTGCTCACTGGTTTGTAAACCAGCTGTTACCACAGACAACAGATACTTGTTACTTCACAAAGTAACTCAGTCCTGGCCTTCCCCTGCCTTGTGTTTTGTGGAGACAGCGCCTCAAGATTCACAAAGTTCTCATATTACAGCTTTTAATTCAGGCGACGGATCCTCGCAGTCAGATAATGAGTCAACTTCGTCTAAGACCATAAGGGATGTTCATATTTCAATGCGGTTAATGGAAGACTTTCTTGATCTTGCTAAAGAAAATACAGAAAAGGATCTGGAAACTTGTGGTATACTTGGTGCTTATCTTGAGAAGGGAACCCTCTATATGACTACTTTAATCATACCAAAGCAGGAATCAGCTTCCAATTCTTGTCAAGCTACAAATGAGGAGGAAGTATTCAAAATTCTAAATGAAAGATCCCTTTATCCTGTGGGATGGATCCATACACATCCGTCTCAAAGTTGTTTCATGTCATCGGTGGATCTGCACACTCAATATTCCTACCAGATGATGATTCCCGAGGCATTTGCCATTGTTTTGGCACCGAAGGATACCTTAAGGAGCTGTGGACTATTTCGCCTAACTGACCCTGAAGGAATGGATATTCTGAAAAATTGTCAGGAGACAGGATTTCATCCACACAAAGAACCAGACAGTGGCAACCCTGTGTATGAGCACTGCTCCAATGTGTACAAAAACTCCAATCTAAGGTTTGAAATCTTTGATTTACGGTAA 888 0.4054 MYKRSNEEQDVSNEKVRNCDTAESSFQSLRINDLDPSGISSFQLGNLSTSCCSLVCKPAVTTDNRYLLLHKVTQSWPSPALCFVETAPQDSQSSHITAFNSGDGSSQSDNESTSSKTIRDVHISMRLMEDFLDLAKENTEKDLETCGILGAYLEKGTLYMTTLIIPKQESASNSCQATNEEEVFKILNERSLYPVGWIHTHPSQSCFMSSVDLHTQYSYQMMIPEAFAIVLAPKDTLRSCGLFRLTDPEGMDILKNCQETGFHPHKEPDSGNPVYEHCSNVYKNSNLRFEIFDLR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00820 295 SUPERFAMILY JAB1/MPN domain 121 250 - -
Cca06g00820 295 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 118 225 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca06g00820 295 ProSiteProfiles MPN domain profile. 121 251 IPR037518 -
Cca06g00820 295 PANTHER FI19924P1 18 295 - -
Cca06g00820 295 Gene3D Cytidine Deaminase, domain 2 99 295 - -
Cca06g00820 295 SMART pad1_6 120 248 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca06g00820 295 CDD MPN_AMSH_like 118 295 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Cca06g00820 295 MobiDBLite consensus disorder prediction 93 117 - -
Cca06g00820 295 PANTHER AMSH-LIKE PROTEASE 18 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00820 Cca-Chr6 21222633 21226495 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00820 K11866 - gmx:100807282 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00820 06 21222633 21226495 Cca06g00820 06 21222633 21226495 ECH