Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00812 ATGGTTCGTCCTGTATTTCCTCCACGTCCTCCTGGAGTAGTTAACATACCTCCAGTATCACGCCCACCTGTTGCAGGGATCCCTGCAGTTCGCCCGATTATTCCTCCTGTTGTCAGACCTATGGTAACCCCTAGTGTTACTCAAGCCGAGAAGTCTCAGAACACAGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGAGTTCATGCTGTCTCTCCTTCAAttatGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGGACTCCTACAAGTTTTGGGTTTTATGAATTTGAGTCTGCTGAAGCGGTTCTCCGTGCCTTGCGTCTTCTTAATAAATTGAATATCGATGGGCAAGAACTAAAGGTCAATGTCAATCAAGCTTTGAAAGAACATCTGGAGCGGTATGTTGTTCAGAAGAAAACTGAGAACTTGAAGAACAAAGAAACTCAGGCAGAAGTAGTTGGAAAAGATGATGAAGGTGCACAACCTTCTAATGCGAATGAGGATGCAAAGGCTGACACAGAACCCTCAAATAAAGCTGATGAATCAACAAACAAGGAATCCCGTGATGTGGCAAACTTTGGGATTGTCACTGATGAAGATAGAGAAGCTGATCGTGAGGCTTTAGAAAAGATCACAAAGATGATAGAGGAAAGGGTGAAGACAAGACCTTTGccaccaccaccacctgcacaaccaACTGGTGATGGTTCTGTGAATTTAACTTCAGAACAACCTGTTAAAACAAGAGATGGAGACTCTGTTATGGATACAGAGAAGAATGAATCAGCTGAAAATAAAAATGATAAAGAGACAAACAATGATAACAAACCAACCAGTGAACACAATAGGCCTGAAAGCCCTGATAGGAGGCATGATAGGAAAAGCagagagagggaccgagatagggaacataaacgagaaaaggaaagggaacttgaaagatatgaaagagaaGCAGAGCGGGAACGCATTCGGAAAGAGAGGGAACAAAGACGAAGGATTGAGGAGGCTGAGCGTCAGTATGAAGCATATTTgaaggattgggagtatagagaaagagagaaagagaaagaacgcctgtatgaaaaagagaaggagaaggaaagggagcgtaaaaggagaaaggaAATACTTTATGATGAAGAGGATGAGGATGAGGATTCTAGGAAGAGGTGGCGCAGAAGTGTGCTAGAGGATAAGAGAAAGAAGAGGCTGCGTGAGAAGGAAGATGACCTAGCTGACAGACAAAAAGAAGAGGAAGAAATTGCTGAAGCCAAGAAAAAGGCTGAGGAGGAACAGAAGCAGCAAAGAGATGCATTAAAGCTATTAGCTGAGCATGTTGTAAATGGTGTTAATGAAAATATGGCTACTGAAAAGATTACTGATGAGGTCAGAAGCATTGTTGCTGAACAAGATACTATGGCTGATTATAATAGTCGTGAAGATCATATTGGTGATGGTCATTCACTAAATGTCATCAATGATGACTCAACCATAGCATCTGTTGCTCCAACTGATACACAGTCAATTGGGAATGCTCCTACAAAGAAATTGGGGTTTGGTCTAGTTGGTTCAGGAAAAAGAACAACTGTTCCTTCTGTTTTCCATGAAGAGGAGGATGATGAAGCACACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTTTCTGGTCCAACACCACCAAATTTGGTTGCAGCTGCAGAATTTGCAAAGCGCATATCCAGTACAAATTTCAAGGAAGAGAAGGTAGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGAAAAGTCTAACCACCGGGACAGGGACAGGAGTGATGAAGATAGTACTCACAACAGAGATGAAAACAAGGAGAGAATTCCTGATCGTGACAGGGATCGAGATCATGGATCGGAGAAACTTAAGACTTCGGATAACAAGAGGCTTTTGGATGCAAAACAATTGATCGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTTTATGACAAGCATCAATTACATGAAAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGAGAAGAAGAAAGCACATTGATAGACTATATTGTTTCCAGTACACAAGAACATGTGAAAGCATCTCAAATGCTTGAGCGTCTTCAGATCATTTTGGATGAAGAGGCTGAAATGTTCGTTCTGAAAATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGACAGGGCTAGCTTTGAGGTCAAAATCATGA 2325 0.3819 MVRPVFPPRPPGVVNIPPVSRPPVAGIPAVRPIIPPVVRPMVTPSVTQAEKSQNTVYIGKIAPTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEAVLRALRLLNKLNIDGQELKVNVNQALKEHLERYVVQKKTENLKNKETQAEVVGKDDEGAQPSNANEDAKADTEPSNKADESTNKESRDVANFGIVTDEDREADREALEKITKMIEERVKTRPLPPPPPAQPTGDGSVNLTSEQPVKTRDGDSVMDTEKNESAENKNDKETNNDNKPTSEHNRPESPDRRHDRKSRERDRDREHKREKERELERYEREAERERIRKEREQRRRIEEAERQYEAYLKDWEYREREKEKERLYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVLEDKRKKRLREKEDDLADRQKEEEEIAEAKKKAEEEQKQQRDALKLLAEHVVNGVNENMATEKITDEVRSIVAEQDTMADYNSREDHIGDGHSLNVINDDSTIASVAPTDTQSIGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDEAHKDKKMRPLVPIDYSTEELQAVQPTVSGPTPPNLVAAAEFAKRISSTNFKEEKVDGERDRSRRSNEKSNHRDRDRSDEDSTHNRDENKERIPDRDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEESTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00812 774 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 126 IPR000504 GO:0003723
Cca06g00812 774 SMART rrm1_1 55 128 IPR000504 GO:0003723
Cca06g00812 774 ProSiteProfiles PWI domain profile. 677 774 IPR002483 GO:0006397
Cca06g00812 774 MobiDBLite consensus disorder prediction 411 443 - -
Cca06g00812 774 SMART pwi_2 690 763 IPR002483 GO:0006397
Cca06g00812 774 SUPERFAMILY PWI domain 695 762 IPR036483 GO:0006397
Cca06g00812 774 MobiDBLite consensus disorder prediction 240 254 - -
Cca06g00812 774 MobiDBLite consensus disorder prediction 152 342 - -
Cca06g00812 774 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Cca06g00812 774 Coils Coil 356 379 - -
Cca06g00812 774 MobiDBLite consensus disorder prediction 177 226 - -
Cca06g00812 774 CDD RRM_RBM25 55 137 IPR034268 -
Cca06g00812 774 SUPERFAMILY RNA-binding domain, RBD 43 129 IPR035979 GO:0003676
Cca06g00812 774 MobiDBLite consensus disorder prediction 510 534 - -
Cca06g00812 774 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 774 - -
Cca06g00812 774 Coils Coil 115 135 - -
Cca06g00812 774 Pfam PWI domain 697 760 IPR002483 GO:0006397
Cca06g00812 774 Gene3D - 45 163 IPR012677 -
Cca06g00812 774 Gene3D PWI domain 653 769 - -
Cca06g00812 774 MobiDBLite consensus disorder prediction 359 397 - -
Cca06g00812 774 Coils Coil 408 452 - -
Cca06g00812 774 Coils Coil 304 353 - -
Cca06g00812 774 MobiDBLite consensus disorder prediction 255 342 - -
Cca06g00812 774 MobiDBLite consensus disorder prediction 598 658 - -
Cca06g00812 774 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 774 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00812 K12822 - gmx:100809428 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00812 06 21121325 21127613 Cca06g00812 06 21121325 21127613 ECH