Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00801 ATGCTATGCTCTCTAATCCGTTTCCGCCGTTACGCTTCTCCGCACTCTCCACTCCTCCGCCTTCCGATTAACCGTTTCTcctccgccgccgccgccgccATGGTTGCTCATGCCAAGGACGAGGCCTACCTTCAGGCGGCGATTCCGAAGCGCGTCCGTTTGTTCGAGACAATCCAGGCGGAGCAGCGCACGCAGCGCCTCTCCCTCTCGCCGGATCCTATCAAGGTGAGTCTCCCCGACGGCAACGTGAAGGAGGCGAAGAAATGGCTCTCGACTCCGCTCGACGTTGCGCGCGAAATCTCGAAGAACCTCGCCAACAACGCGCTCATTGCCAAGGTCAACGGAGTGCTATGGGACATGACGAGGCCGCTTGAGGACGATTGCCAGCTCCAGATCTTCAGGTTCGACGACGACGAAGGCCGCGACACTTTCTGGCACTCCAGCGCGCACATTCTCGGCCAGTCTCTTGAGACGGAGTATGGATGCAAGCTTTGCATTGGACCATGCACTACCAGAGGAGAGGGATTCTATTACGATGCGTTTTACGGTGACTTGGGTCTCAATGACGATCACTTTAAACAAATTGAGGCTGGAGCATTGAAGGCTGTTGCGGAAAAGCAACCCTTTGAACGTATTGAAGTTACGCGTGATCAGGCACTTGAGATGTTCTCGGATAATAAGTTTAAGGTTGAGATTATCAATGATTTGCCTCCCGACAAAACTATCACGGTTTACAGGTGTGGTCCCCTGGTTGATTTATGTCGTGGACCCCATATACCTAATACATCATTCGTCAAAGCAATTGCATGTTTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTGCAAAGAGTTTATGGCATTTCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCATCGGCTCGAGGAGGCTAAAAAGTACGACCACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGTCCTGGAAGCTGGTTTTTTCTTCCACATGGTGCTCGGATCTACAACAAACTCATGGATTTCATTAGAAATCAGTACAGAGACAGGGGATATCAAGAGGTCATATCTCCTAATGTATTTAACATGGATCTATGGGTGCAATCTGGTCATGCAGCAAATTACAAAGAGGATATGTTTATCTTAGAGATTGACAAGCAAGAGTTTGGGTTGAAACCCATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCGTATAGAGAACTTCCTCTGCGTTTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGACGATGCACATATTTTCTGCAGGGAGTCCCAGATCAAGGATGAAGTGAGAAAATGCCTGAATTTCATCAATTATGTCTATGAAATATTTGGTTTCACATATGAGCTGAAGCTCTCAACGAGGCCAGAGAAATATCTAGGAGATTTGGCAACTTGGGACAAAGCTGAAAGTGCTCTTAAGGAAGCTTTAGGTGATTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTTTATGGACCAAAGATAGACATCAGTGTTTCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACACAGAGCCATTCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCGATTGTTTGCCCTGTCTCCGAGAAATCACAATCTTATGCGCTGCAGGTGCGAGATCAGATCCACCAAGCAGGGTATCACGTTGATGCTGATACAACTGATAGGAAGATTCAAAAGAAGGTGCGAGAAGCGCAGTTAGCACAATACAACTACATCTTGGTTGTCGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGAGTTAGAGACAAAGCAGATCATAAAGTTATGAGCATTGAGGACCTACTCAAACATTTCAGAGACGAATTTGCAGCTTTCCATTGA 2127 0.4607 MLCSLIRFRRYASPHSPLLRLPINRFSSAAAAAMVAHAKDEAYLQAAIPKRVRLFETIQAEQRTQRLSLSPDPIKVSLPDGNVKEAKKWLSTPLDVAREISKNLANNALIAKVNGVLWDMTRPLEDDCQLQIFRFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKVEIINDLPPDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYKEDMFILEIDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRKCLNFINYVYEIFGFTYELKLSTRPEKYLGDLATWDKAESALKEALGDFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHKVMSIEDLLKHFRDEFAAFH 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00801 708 CDD ThrRS_core 315 611 IPR033728 -
Cca06g00801 708 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 395 601 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca06g00801 708 SUPERFAMILY Class II aaRS ABD-related 599 704 - -
Cca06g00801 708 Pfam Anticodon binding domain 613 702 IPR004154 -
Cca06g00801 708 SUPERFAMILY TGS-like 74 134 IPR012676 -
Cca06g00801 708 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 242 291 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cca06g00801 708 CDD ThrRS_anticodon 611 701 - -
Cca06g00801 708 Hamap Threonine--tRNA ligase [thrS]. 139 706 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 Pfam TGS domain 74 133 IPR004095 -
Cca06g00801 708 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 37 707 - -
Cca06g00801 708 SMART tRNA_SAD_4 242 291 IPR012947 GO:0004812|GO:0005524|GO:0043039
Cca06g00801 708 Gene3D - 604 707 IPR036621 -
Cca06g00801 708 PRINTS Threonyl-tRNA synthetase signature 401 429 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 PRINTS Threonyl-tRNA synthetase signature 434 457 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 PRINTS Threonyl-tRNA synthetase signature 535 563 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 PRINTS Threonyl-tRNA synthetase signature 579 592 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 PRINTS Threonyl-tRNA synthetase signature 606 618 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 TIGRFAM thrS: threonine--tRNA ligase 145 703 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Cca06g00801 708 Gene3D - 137 294 - -
Cca06g00801 708 Gene3D Bira Bifunctional Protein; Domain 2 295 603 IPR045864 -
Cca06g00801 708 SUPERFAMILY Class II aaRS and biotin synthetases 315 598 IPR045864 -
Cca06g00801 708 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 340 606 IPR006195 -
Cca06g00801 708 SUPERFAMILY ThrRS/AlaRS common domain 136 313 IPR018163 GO:0000166
Cca06g00801 708 CDD TGS_ThrRS 74 139 - -
Cca06g00801 708 Gene3D - 72 133 IPR012675 -
Cca06g00801 708 ProSiteProfiles TGS domain profile. 72 134 IPR004095 -
Cca06g00801 708 PANTHER THREONINE-TRNA LIGASE 37 707 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00801 Cca-Chr6 20920208 20936682 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00801 K01868 - gmx:100812652 1365.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00801 06 20920208 20936682 Cca06g00801 06 20920208 20936682 ECH