Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00796 ATGGGTACCCGTGGAAAGCTTGAGGTAGATATTGATCTCAAGTCTAAACCAGACAAGTTCTGGGAAACCATAAGGAACTCTACTGACATATTCCCTAAGGCCTTCCCAACTGATTACAAAAGCATTGACATTCTTGAGGGTGATGGCAAGGCTGCTGGCTCTATCCGCCATATAACTTATGCTGAAGGTTCACCAATTGTGAAATCATCGAAAGAGAAGATTTTGGCTGCAGATGACACAAAGAAGACAGTGTCATACGCTGTGATCGAAGGGGACCTCCTAAAGTATTACGACAAATTCATAGGACACATCACAGTGACACCAAGTGGGGAGGGATCCGAGGTGAAATGGACTGCTGAGTACCACAAGGCTAGCCCTGATGTGCCTGATCCAACTGTCGTCAAAGATTTTGCAGTCAAGAACTTCCTTGAGGTCGATGCCTATGTTCTAGCAAACGCATAG 462 0.4545 MGTRGKLEVDIDLKSKPDKFWETIRNSTDIFPKAFPTDYKSIDILEGDGKAAGSIRHITYAEGSPIVKSSKEKILAADDTKKTVSYAVIEGDLLKYYDKFIGHITVTPSGEGSEVKWTAEYHKASPDVPDPTVVKDFAVKNFLEVDAYVLANA 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00796 153 SMART Bet_v_1_2 2 152 IPR000916 GO:0006952
Cca06g00796 153 Pfam Pathogenesis-related protein Bet v 1 family 4 152 IPR000916 GO:0006952
Cca06g00796 153 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca06g00796 153 PRINTS Major pollen allergen Bet V1 signature 51 60 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca06g00796 153 PRINTS Major pollen allergen Bet V1 signature 68 87 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca06g00796 153 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca06g00796 153 PRINTS Major pollen allergen Bet V1 signature 141 151 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca06g00796 153 Gene3D - 1 152 IPR023393 -
Cca06g00796 153 PANTHER MLP-LIKE PROTEIN 423 6 150 - -
Cca06g00796 153 PANTHER MLP-LIKE PROTEIN 423 6 150 - -
Cca06g00796 153 CDD Bet_v1-like 5 151 - -
Cca06g00796 153 SUPERFAMILY Bet v1-like 1 151 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00796 - - gmx:100499973 229.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00796 06 20831943 20833071 Cca06g00796 06 20831943 20833071 ECH