Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00770 ATGTCCGATCCTTCGAGGGCTCGCGTTACCATTACTCTTGGGCGTAGCGGTCAGGTTGTGAAGAGGGATATATCTACTTTAGATTCTTCTTTCTCTTCTCTTCCGTCGACTGGTACTAAGCGGTCTGTGCGAGACAGAATTGGAAACAATGCGGATAGTTCTGCGTGGCATGGAAATGGATATGGCAGCAATAAACGACCGCGAGATATAAGCATGCAAAATGGACTGGATGGAAATGATCTCCGATTGAAGCTCATGCGAAAAAGTGCATCTAGGCAGGCTGACAGTAATGGCAGTAAGAGGCATATGGATCTCCGTGAAAAACTTTCAAAGGCAACTCATCCTCTGACTAACAGTTATAATTCAAAGCAGCATGTGCCAGAATCAAGGGAAACAAGTTTGTTGAGACCAATTCCCTCAGCTAGAAGTTCTGATGATTTAATGCGTATGGAATCCATGAGAAGTTCATACTCTCCTTGGACATTGGATCATATTAGGAGAAGATCACCGGATGGTTTTCCAAGTGCTTCCAGGGGGATTTCCCCCCAAAGGGATGTCCAAGACATACAGAGAAGGCCATTAAGCAGGACATATGACAGCGTTAGATCAGTTCCATATGTAGGTAGGGGTGTTCTTGAAACTTCAAGGCCTCCAGTAAGTACACCTCAATCTTTCATGTCCCGCTCCACAATGTCCACATTGCCTCCAGTAACTGCTAAGCCCGTAGCATCTCATCCCAGCCAACTTCCTCCATCAAGCAGTGTTGCACAAAGGTCTTCATATGTGGGTGATGAACAAGTACAACAATCAAACCAAAATGTGGATAGCCTGTTACATGCACTGGGACTTCAAAAATATGCCATTCTCTTCAAGGCTGAGGAAGTGGATATGACTGCATTGAAGCAGATGGGAGAAAATGACCTCAAAGAGCTTGGGATTCCTATGGGTCCAAGGAAAAAAATTCTTCTCGCTCTCTTGCCCCGTACTAAACGTCAACAATGA 1002 0.4501 MSDPSRARVTITLGRSGQVVKRDISTLDSSFSSLPSTGTKRSVRDRIGNNADSSAWHGNGYGSNKRPRDISMQNGLDGNDLRLKLMRKSASRQADSNGSKRHMDLREKLSKATHPLTNSYNSKQHVPESRETSLLRPIPSARSSDDLMRMESMRSSYSPWTLDHIRRRSPDGFPSASRGISPQRDVQDIQRRPLSRTYDSVRSVPYVGRGVLETSRPPVSTPQSFMSRSTMSTLPPVTAKPVASHPSQLPPSSSVAQRSSYVGDEQVQQSNQNVDSLLHALGLQKYAILFKAEEVDMTALKQMGENDLKELGIPMGPRKKILLALLPRTKRQQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00770 333 MobiDBLite consensus disorder prediction 28 76 - -
Cca06g00770 333 SMART SAM_4 266 331 IPR001660 GO:0005515
Cca06g00770 333 ProSiteProfiles SAM domain profile. 269 332 IPR001660 GO:0005515
Cca06g00770 333 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 332 - -
Cca06g00770 333 MobiDBLite consensus disorder prediction 112 128 - -
Cca06g00770 333 MobiDBLite consensus disorder prediction 245 268 - -
Cca06g00770 333 PANTHER OSJNBA0060P14.15 PROTEIN 1 332 - -
Cca06g00770 333 Pfam SAM domain (Sterile alpha motif) 269 325 IPR001660 GO:0005515
Cca06g00770 333 SUPERFAMILY SAM/Pointed domain 270 325 IPR013761 -
Cca06g00770 333 MobiDBLite consensus disorder prediction 110 150 - -
Cca06g00770 333 MobiDBLite consensus disorder prediction 28 70 - -
Cca06g00770 333 MobiDBLite consensus disorder prediction 212 268 - -
Cca06g00770 333 MobiDBLite consensus disorder prediction 168 188 - -
Cca06g00770 333 MobiDBLite consensus disorder prediction 216 237 - -
Cca06g00770 333 Gene3D - 271 333 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00770 Cca-Chr6 20365112 20372298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00770 236 325 Glycosyltransferase AT3G07170 47.826 1.62e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00770 - - gmx:100797199 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00770 06 20365112 20372298 Cca06g00770 06 20365112 20372298 ECH