Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00769 ATGGGAGTCCTTCAACGCCCCTCGTGTTCCAGCAACTCAAAGCACCAACAACAACCACACTCCCAAGATCATCATCACCTTCATTCAGAATCATCCTCCCTCTCTTCCCAACCAAGTCTCCCTTCTGTTCCCTCCCTcaccccaccacaaaaccaccaccaaccaccgcaaaccaccacccaccaccgcctcctagccaccGTCAAAGCCCACACCTCCCCCATCTCTGCCCTCACCCTCCACGCCAAGTCCCTCTTCAGCGCCTCCTCAGACGGCCAAGTAAAAACATGCAGCAGAGATCCCTTCACTCTCCAAACCTCAGACACCAACAACAACGTTGTTGTGGCATCCACCACCGCACCCATCAAGTCCCTCATCGTTCACAACGATGTCCTCTTCACCGCACACCAAGACCACAAAATCCGCGTCTGGAAAACCGACGACAACCAAAGCCAAAACTACAAATGCATAGCCACGCTTCCCACGCTCCACGACCGCATCTCCAAGCTATTCTCCTCCAAAAACTACGTCAAAATCCGCCGCCACAAGAAACGCACGTGGGTGCACCACGTGGACGCTGTCTCCGCTCTCGCTCTTTCCCAAGACAACTCCCTCCTCTACTCCGCCTCATGGGACAGAACGTTCAAAGTCTGGCGAACCTCCGACTTCAAATGCTTGGACTCCGTGCAAAACGCGCACGACGACGCCATCAACGCCTTAATTGTGTCGCAAAACGGCGTCGTCTACACGGGTTCCGCGGACACCAAAATCAAGATGTGGAAGAAGCAGGAGGAGGAGGGTGATGAGAAAATGAAAAGTCAAAAGCATTTCCTGTTGGGGACGTTGGAGAAGCATAGGTCAGCGGTGAATGCTCTTGCGCTGAGCGGCAACGGGTCGGTGTTGTACTCGGGCGCGTGTGACAGGTCGATATTGGTGTGGGAGAGCGATGGAGGGAGCGAGGGTATGGTGGTGGTGGGGGCTTTGAGGGGGCATACGAAGGCTATACTGTGTTTGGTGGCGGTGGGGGATTTGGTGTGCAGTGGTTCGGCGGATAAGAGTGTTAGGGTGTGGAGGAGAGGGGTTGAGGAGAAGGGGTATTCGTGTTTGGCGGTGTTGGAAGGTCATCGACGACCCGTCAAGTGTTTGGCTATGGCTGTTGACTCCTTCAACATGGGTAGTGGTCCTCATCAGGATGATGCTAATACTACCTCTTATCTGGTTTACAGTGGAGGGCTTGATTGTGACATTAATGTCTGGCAAATACGTCTTCCTAGTTAA 1278 0.5078 MGVLQRPSCSSNSKHQQQPHSQDHHHLHSESSSLSSQPSLPSVPSLTPPQNHHQPPQTTTHHRLLATVKAHTSPISALTLHAKSLFSASSDGQVKTCSRDPFTLQTSDTNNNVVVASTTAPIKSLIVHNDVLFTAHQDHKIRVWKTDDNQSQNYKCIATLPTLHDRISKLFSSKNYVKIRRHKKRTWVHHVDAVSALALSQDNSLLYSASWDRTFKVWRTSDFKCLDSVQNAHDDAINALIVSQNGVVYTGSADTKIKMWKKQEEEGDEKMKSQKHFLLGTLEKHRSAVNALALSGNGSVLYSGACDRSILVWESDGGSEGMVVVGALRGHTKAILCLVAVGDLVCSGSADKSVRVWRRGVEEKGYSCLAVLEGHRRPVKCLAMAVDSFNMGSGPHQDDANTTSYLVYSGGLDCDINVWQIRLPS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00769 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 218 - -
Cca06g00769 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 314 IPR001680 GO:0005515
Cca06g00769 425 Gene3D - 57 156 IPR015943 GO:0005515
Cca06g00769 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 261 IPR001680 GO:0005515
Cca06g00769 425 SUPERFAMILY WD40 repeat-like 65 421 IPR036322 GO:0005515
Cca06g00769 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 314 - -
Cca06g00769 425 Gene3D - 162 265 IPR015943 GO:0005515
Cca06g00769 425 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 20 424 IPR045182 -
Cca06g00769 425 Gene3D - 266 425 IPR015943 GO:0005515
Cca06g00769 425 MobiDBLite consensus disorder prediction 1 60 - -
Cca06g00769 425 SMART WD40_4 180 219 IPR001680 GO:0005515
Cca06g00769 425 SMART WD40_4 222 261 IPR001680 GO:0005515
Cca06g00769 425 SMART WD40_4 61 98 IPR001680 GO:0005515
Cca06g00769 425 SMART WD40_4 109 145 IPR001680 GO:0005515
Cca06g00769 425 SMART WD40_4 365 420 IPR001680 GO:0005515
Cca06g00769 425 SMART WD40_4 275 314 IPR001680 GO:0005515
Cca06g00769 425 SMART WD40_4 321 358 IPR001680 GO:0005515
Cca06g00769 425 CDD WD40 64 420 - -
Cca06g00769 425 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 20 424 - -
Cca06g00769 425 Pfam WD domain, G-beta repeat 279 313 IPR001680 GO:0005515
Cca06g00769 425 Pfam WD domain, G-beta repeat 326 357 IPR001680 GO:0005515
Cca06g00769 425 Pfam WD domain, G-beta repeat 224 261 IPR001680 GO:0005515
Cca06g00769 425 Pfam WD domain, G-beta repeat 367 419 IPR001680 GO:0005515
Cca06g00769 425 Pfam WD domain, G-beta repeat 185 218 IPR001680 GO:0005515
Cca06g00769 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Cca06g00769 425 MobiDBLite consensus disorder prediction 1 17 - -
Cca06g00769 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 357 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00769 Cca-Chr6 20319612 20320889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00769 122 361 Acyl Lipid Metabolism Gene Families AT3G18860 26.336 8.59e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00769 - - vun:114174011 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00769 06 20319612 20320889 Cca06g00769 06 20319612 20320889 ECH