Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00766 ATGAGATTAAGAGCAGTAACAAGCTCTACATTCCTTCTCATAATATTATCTTCTCTATTTGTTGATGTATCTGTCTCAGCATCTTTCCTACCAGCATTAATCAAAGGAATCCCGTTGTGGCTCAAAAACAGCAGAACAAGTAAATTTTCCAGCGTCTGGAATAAACTGAAGTCACTCTTCACGTTCAAGAAAGGACTAAAGCTTGGAGACGTATACAAGGGTTTGTCCGAAGTGAAAGAATATTTAGACATATTCGGATACTTAAACTCTACTTTGAATTCAAACTTCAACGACACTTTCACCCTCGAGCTCCAATCCGCAATAAAACAATACCAGAAAAACTTCAACCTCCAAGTCACGGGGCAGCTAGACCAAGACACGTATAGCATGATATCGCAGCCACGGTGCGGTGTTCCCGACGTCGTCAACACGACGTCGTTTACGCGGTGGTGGAAACCGGGGCGGAGAGAGCTGACCTACGCTATTCACCCTCGGAATAACGTCTCTAACGGCGTCAAGGTTTTGTTACGCGACGTTTTCGCGCGGTGGTCGAATGCGACGTCGTTGGGGTTGGCGGAGACGGCGTCGTTCGATGGCGCGGACGTTAGGGTTGCCTTCGTGGTGTTGGATGGAGAAGGTGGAACGGTGGGGGGTGCGGAGACGAACTACAGTGCGCGTTTTGGGAGCGTGTATTTGGATTCGGAGGAGAAGTGGGTGGTGAAAGGTGAGAGCGATGAGGGTGAGGTGGATTTGGAGTCTGTGCTGATGCACGTGGTTGGTCACGTGCTAGGGTTAGGGCATTCCTTTGTGGAAGAGGCTGTCATGTACCCGATCGTGTTGCCCGACAAGAAGAAGACCAAGTTAGCGTATGATGACTTGCTCAGGATTCACCGAATATACGGTGAAACCTAG 912 0.489 MRLRAVTSSTFLLIILSSLFVDVSVSASFLPALIKGIPLWLKNSRTSKFSSVWNKLKSLFTFKKGLKLGDVYKGLSEVKEYLDIFGYLNSTLNSNFNDTFTLELQSAIKQYQKNFNLQVTGQLDQDTYSMISQPRCGVPDVVNTTSFTRWWKPGRRELTYAIHPRNNVSNGVKVLLRDVFARWSNATSLGLAETASFDGADVRVAFVVLDGEGGTVGGAETNYSARFGSVYLDSEEKWVVKGESDEGEVDLESVLMHVVGHVLGLGHSFVEEAVMYPIVLPDKKKTKLAYDDLLRIHRIYGET 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00766 303 Pfam Matrixin 155 301 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Cca06g00766 303 Pfam Putative peptidoglycan binding domain 76 130 IPR002477 -
Cca06g00766 303 Gene3D Collagenase (Catalytic Domain) 68 303 IPR024079 GO:0008237
Cca06g00766 303 PANTHER MATRIX METALLOPROTEINASE 29 301 - -
Cca06g00766 303 SUPERFAMILY PGBD-like 66 141 IPR036365 -
Cca06g00766 303 PANTHER MATRIX METALLOPROTEINASE 29 301 - -
Cca06g00766 303 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 127 300 - -
Cca06g00766 303 PRINTS Matrixin signature 131 144 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca06g00766 303 PRINTS Matrixin signature 176 191 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca06g00766 303 PRINTS Matrixin signature 254 279 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca06g00766 303 PRINTS Matrixin signature 288 301 IPR021190 GO:0004222|GO:0006508|GO:0008270
Cca06g00766 303 ProSitePatterns Matrixins cysteine switch. 134 141 IPR021158 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Cca06g00766 303 SMART col_5 146 302 IPR006026 GO:0006508|GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00766 Cca-Chr6 20270081 20271039 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00766 - - gmx:100782021 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00766 06 20270081 20271039 Cca06g00766 06 20270081 20271039 ECH