Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00759 ATGAGAACCCATTTTGATTTTCACTTTCTTCCACTATTTTTGTTCACCCTACTCCTTCTATTGGGCCAAGCCAGACCCGACCCTGACCCACTTCAAGACTACTGCGTTGCAGATAACAAAAACGAATTTTTCATCAACGGTGTTCCTTGCATCAACCCAGAGCAAGTTTCCCCATCCCATTTTGTCACTTCTGCTTTGTCCAAAACTGGCAACACTAGTAACACATTCGGCTTCAGCGTCACAGCCACTAACACTGTTAACCTTCCTGGGCTTAACACATTGGGCCTGGTACTGGCCCGCGTTGACATAGCGGCTAATGGGATCGTGCCACCTCACTCCCACCCACGGGCCTCGGAAGTAACCACTTGCCTTAAGGGCCTGCTTCTTGTGGGCTTCATTGACACAAATAACCGCGTCTTCACCCAGAACCTGAGGCCCGGTGAGTCATTTGTGTTCCCAAAGGGCCTGATCCATTTCTTGTTCAACCGTGACACGAAAGAGCCCGCACTGGCCCTTTCTGGGCTCAATAGCCAGAACCCAGGTTCGCAAATTGCATCACTTGCAACATTTGCTAGCAAGCCCCCCATTCCTGTGGAAATTCTCAAGAGGGCTTTCCAAATTAGCACCAGAGAAGTGGATATTATTCGTGAAAATCTTGGAGGGTGA 666 0.4925 MRTHFDFHFLPLFLFTLLLLLGQARPDPDPLQDYCVADNKNEFFINGVPCINPEQVSPSHFVTSALSKTGNTSNTFGFSVTATNTVNLPGLNTLGLVLARVDIAANGIVPPHSHPRASEVTTCLKGLLLVGFIDTNNRVFTQNLRPGESFVFPKGLIHFLFNRDTKEPALALSGLNSQNPGSQIASLATFASKPPIPVEILKRAFQISTREVDIIRENLGG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00759 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 220 - -
Cca06g00759 221 SMART Cupin_1_3 64 213 IPR006045 -
Cca06g00759 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 12 220 - -
Cca06g00759 221 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Cca06g00759 221 Pfam Cupin 66 212 IPR006045 -
Cca06g00759 221 SUPERFAMILY RmlC-like cupins 27 217 IPR011051 -
Cca06g00759 221 CDD cupin_OxOx 27 219 - -
Cca06g00759 221 Gene3D Jelly Rolls 26 221 IPR014710 -
Cca06g00759 221 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Cca06g00759 221 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Cca06g00759 221 PRINTS Germin signature 176 191 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00759 Cca-Chr6 20201580 20202588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00759 9 220 Miscellaneous Gene Families AT5G39130 43.981 8.24e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00759 - - gmx:100500154 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00759 06 20201580 20202588 Cca06g00759 06 20201580 20202588 ECH