Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00757 ATGGCCACCAACACTACTCAACTCATCCTCTCACTCCCACTCCCACTCCCACGTCGTTACCATTCTAATCCTTTCACATTTCTTCCAACCGCCACTCACTCATTCTCTCTCCTTCgccttcgattccgagcgtccttctccttcaagtccccaacctcacccctgcgcgccttctccgacgccgaggaagatgaagaagaagaagaagaagaagaagaagaagacgaagaggaagaagaagatgaagaagaatacgacgacgacgatgacgtcgtcgctgccgacgaatacgacgacgtaccggccgaggcttccgacgacgaggccgatgcgttcgctcgccacgacggattcaagtggcAGAGAGTCGAGAAGTTAATCAACGAAGTCAGGGAGTTCGGCGCCGACCTCATCGACGTCGACGAGCTCGCCTCCGTTTACGACTTTCGCATCGACAAGTTTCAGCGCCAGGCGATAGTGGCTTTTCTGAGAGGCTCGTCGGTGGTGGTTTCTGCTCCGACCAGCAGTGGGAAGACGCTGATTGCGGAGGCCGCCGCGGTGGCCACGGTGGCTAGGGGGCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTGGCGAGGGGACGgcgaatattctacacgacgccgcttaaggcgttgtccaatcagaagtttcgcgagttcCGCGAGACTTTTGGCGACAATAATGTTGGCCTTCTAACAGGCGATTCTGCTGTCAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTAAATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCAAAAGAAGTTCAATTAATTTGCTTGTCAGCAACTGTTGCAAATCCAGATGAGTTGGCTGGGTGGATTGGTCAGATTCATGGTGGAACAGAATTGGTAACATCGTCAAAACGCCCAGTTCCGTTGACATGGCATTTCTCTTTGAAGAATTCCTTATTACCACTTCTTAACGAGAAAGGAACACACATGAACAGCAGGAAGCTGTCACTCAATTATCTTCAACTTCAAGCTGCAGCAGCTAAACCTTACAAGGATGATTGGTCTAAAAAAAGGAATTCCCGGAAACGTGGAACTCGCTCAGgatatgatgatgatgatgaAAGCATGTTTGAACAACGTTCCCTTTCAAAGAATAACATAAACGCAATTCGTCGTTCACAAGTAGTTCCTCAAGTAATTGATACTTTATGGCAACTTCAGTCCAGGGACATGCTGCCAGCTGTTTGGTTTATTTTTAGCAGGAAGGGTTGTGATGCAGCTGTGCAATATCTGGAAAATTGCAAACTTTTAGATGAGTGTGAAACAAGTGAGGTTGAACTAGCCTTCAAGAGGTTCCGCATGCAGTATCCTGATGCTGTTAGAGAATCAGCTATAAGAGGACTTTTGCAAGGGGTTGCTGCACATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGTTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACAGAAACCCTGGCTGCTGGAATCAATATGCCCGCTAGAACAGCTGTTATTTCATCCCTCAGTAAAAGAGGTGATAGTGGACGAATCCCATTAAGCTCGAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATCGATGAAAGTGGTCATGTAGTCCTCATCCAAGCTCCTAATGAAGGTGCTGAAGAGGGATGCAAAGTACTGTTTGCAGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGCGTGAAAGCCATCCATAGGTCGAATGAATCAGATAACATGAAAACTTTAACAGGGAGAACTTTGGAAGAAGCTAAGAAATTAGTTGAGCAGAGTTTTGGAAATTATGTTAGTAGTAATGTAATGCTGGCTGCTAAAGAGGAACTTGTTAAAATTGAGAAAGAAATTGAGTTGCTGATGTCAGAAATTACTGATGAAGCAATTGATAAAAAAACCAGGAAGGCTTTATCACCACGACAATACAAGGAAATTGCAGAACTACAGGAAGATTTGAGGGCAGAAAAACGTGTTCGGACTGAATTGCGGAAACAAAAGGAAGCAAAGAGATTATCTGCCCTGAAACCTTTGCTAGAGGAGCCTGAAAGTGAACATTTACCGTTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTGAACATTCGATTCCTGCTGTGTATTTGGGGAAGGTTGACTCTCTTAATGCTCCAAAACTCAAAAATATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGAAGCAGGGCCAAGTATTGCTGATTCTGAGTCGAATGAAGATCTTGAACCATCATATCACATGGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACGGAAAAGTGGATTAAAACGGTTTATGGGACAGGGTTTCCTAATGTTCCATTGGCTCAAGGGGATGATCGACCTAGAGAAATTATGAGTATTCTCCTTGATAAGGAGGACATGAATTGGGACAGGCTTTCTAACTCTGAACATGGTGGTTTATGGTTCATGGAAGGATCTCTGGAGACATGGTCTTGGAGCTTGAATGTCCCTGTTCTGAGTAGCTTGTCAGAAAATGATGAGCTACTACTACAGTCTCAAGACTACAAAGATGCCATTGAACGTTACAAGGAACAAAGAAATAAAGTTGCACGCTTGAAGAAAAAGATAGGTCGTAGTGAAGGCTATAAAGAATATTTTAAAATCATAGATGCAGTCAAGTTTACTGAGGAAAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTAATTAATCGGATAGAACAGATTGAACCCTCGGGTTGGAAGGAGTTTATGCAGGTTAGCAAAGTCATACATGAAATCAGAGCTTTAGATATTAATACGCATGTCATATTTCCACTTGGTGAAACAGCAGCTGCAATTCGAGGAGAAAATGAGTTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTACTAGAACTAAAACCCGCACAGCTTGCTGCAGTGTGTGCAAGTTTGGTGTCCGAGGGTATCAAAATCCGACCCTGGAAAAATAACAGTTATATTTATGAGCCTTCTGCAACTGTAACCAAGTTCGTAACGTTATTGGATGAGCAAAGAAGCGCCCTATTGGCAATGCAAGATAAGCATGGGGTGACAATATCTTGCTGTTTGGATAGTCAATTTTGTGGTATGGTTGAGGCCTGGGCTTCTGGGTTGACCTGGAGAGAAATAATGATGGATTGTGCAATGGATGATGGCGATTTAGCTCGTCTCCTTCGACGAACCATTGATCTGTTAGTTCAGATTCCAAAATTGCCAGATATTGATCCATTGTTGCAGCGCAATGCAAAGGCTGCTTCTGATGTCATGGATCGGCCTCCAATAAGTGAACTTATTGCCATGGCTCTGTCACGTTTATCCCACCGCGGCGTCGGATCCACCCTCCTGAGGCCCTTCTCCGCCCGTCCGATCTCCTCCGACGCCACTCTCACCATCGAGACCTCGGTCCCCTTCACCGCGCACAACTGCGACCCTCCGTCGCGTGACGTCGCCACCTCCGCCCCGGAGCTCCTCACCTTCTTCCGCGACATGGCCCTGATGCGGCGCATGGAGATCGCCGCGGACTCCCTCTACAAGGCCAAGCTCATCCGCGGCTTCTGCCACCTCTACGACGGCCAGGAGGCGGTCGCCGTCGGCATGGAGGCTGGAATCACCAAGCGCGACTGCATCATCACCGCCTACCGCGACCACTGCACCTTCCTGGGCCGCGGCGGCACGCTGCTCGAGGTCTTCGCCGAGCTCATGGGCCGCAGAGAGGGCTGCTCCAAGGGCAAAGGGGGCTCCATGCATTTCTACAAGAAGGAGAGTGGGTTCTACGGTGGGCACGGGATTGTGGGGGCGCAGATCCCGTTGGGGTGTGGCTTGGCGTTTGCGCAGAAGTATTCTAAGGATGAGGCTGTCACCTTTGCTTTGTATGGAGATGGAGCTGCCAACCAGGGGCAGCTTTTTGAGGCGCTCAATATTGCCGCACTTTGGGATCTTCCTGCCATTTTGGTCTGCGAGAATAATCACTATGGGATGGGGACTGCGGAGTGGAGGGCTGCCAAGAGTCCTGCTTATTATAAGCGTGGGGATTATGTGCCTGGATTGAAGGTAGATGGCATGGACGTTCTTGCTGTTAAACAAGCTTGCAAATTTGCAAAGGAACATGCTTTGAAGAATGGGCCCCTTATTCTTGAAATGGATACTTACAGATACCATGGTCACTCCATGTCTGATCCTGGTAGCACATATCGCACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGTTGTTGTTGACTCACGACATTGCTGCTGAAAAGGAGCTAAAG 4671 0.4177 MATNTTQLILSLPLPLPRRYHSNPFTFLPTATHSFSLLRLRFRASFSFKSPTSPLRAFSDAEEDEEEEEEEEEEDEEEEEDEEEYDDDDDVVAADEYDDVPAEASDDEADAFARHDGFKWQRVEKLINEVREFGADLIDVDELASVYDFRIDKFQRQAIVAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARGRRIFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGGTELVTSSKRPVPLTWHFSLKNSLLPLLNEKGTHMNSRKLSLNYLQLQAAAAKPYKDDWSKKRNSRKRGTRSGYDDDDESMFEQRSLSKNNINAIRRSQVVPQVIDTLWQLQSRDMLPAVWFIFSRKGCDAAVQYLENCKLLDECETSEVELAFKRFRMQYPDAVRESAIRGLLQGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNELLQMAGRAGRRGIDESGHVVLIQAPNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIHRSNESDNMKTLTGRTLEEAKKLVEQSFGNYVSSNVMLAAKEELVKIEKEIELLMSEITDEAIDKKTRKALSPRQYKEIAELQEDLRAEKRVRTELRKQKEAKRLSALKPLLEEPESEHLPFLCLQYRDSEGVEHSIPAVYLGKVDSLNAPKLKNMISSVDSFALNLAEAGPSIADSESNEDLEPSYHMALGSDNSWYLFTEKWIKTVYGTGFPNVPLAQGDDRPREIMSILLDKEDMNWDRLSNSEHGGLWFMEGSLETWSWSLNVPVLSSLSENDELLLQSQDYKDAIERYKEQRNKVARLKKKIGRSEGYKEYFKIIDAVKFTEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSKVIHEIRALDINTHVIFPLGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCASLVSEGIKIRPWKNNSYIYEPSATVTKFVTLLDEQRSALLAMQDKHGVTISCCLDSQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLQRNAKAASDVMDRPPISELIAMALSRLSHRGVGSTLLRPFSARPISSDATLTIETSVPFTAHNCDPPSRDVATSAPELLTFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAGITKRDCIITAYRDHCTFLGRGGTLLEVFAELMGRREGCSKGKGGSMHFYKKESGFYGGHGIVGAQIPLGCGLAFAQKYSKDEAVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLTHDIAAEKELK 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00757 1557 Gene3D - 385 656 IPR027417 -
Cca06g00757 1557 Pfam Dehydrogenase E1 component 1287 1557 IPR001017 GO:0016624
Cca06g00757 1557 Coils Coil 955 985 - -
Cca06g00757 1557 Gene3D - 1006 1216 - -
Cca06g00757 1557 Gene3D - 238 384 IPR027417 -
Cca06g00757 1557 Gene3D - 112 197 IPR027417 -
Cca06g00757 1557 Coils Coil 716 736 - -
Cca06g00757 1557 MobiDBLite consensus disorder prediction 54 106 - -
Cca06g00757 1557 MobiDBLite consensus disorder prediction 60 106 - -
Cca06g00757 1557 SMART DSHCT_2 1049 1223 IPR012961 -
Cca06g00757 1557 Pfam DSHCT (NUC185) domain 1053 1219 IPR012961 -
Cca06g00757 1557 Pfam DEAD/DEAH box helicase 154 360 IPR011545 GO:0003676|GO:0005524
Cca06g00757 1557 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 32 195 - -
Cca06g00757 1557 Coils Coil 55 88 - -
Cca06g00757 1557 CDD SF2_C_Ski2 467 637 - -
Cca06g00757 1557 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 32 195 - -
Cca06g00757 1557 Coils Coil 1002 1022 - -
Cca06g00757 1557 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 243 1221 - -
Cca06g00757 1557 Gene3D - 1232 1557 - -
Cca06g00757 1557 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1274 1557 IPR029061 -
Cca06g00757 1557 SMART ultradead3 147 391 IPR014001 -
Cca06g00757 1557 MobiDBLite consensus disorder prediction 432 452 - -
Cca06g00757 1557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 377 IPR014001 -
Cca06g00757 1557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 673 IPR001650 -
Cca06g00757 1557 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 243 1221 - -
Cca06g00757 1557 SMART helicmild6 541 627 IPR001650 -
Cca06g00757 1557 CDD TPP_E1_PDC_ADC_BCADC 1284 1557 - -
Cca06g00757 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 640 IPR027417 -
Cca06g00757 1557 Coils Coil 758 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00757 Cca-Chr6 20154568 20169254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00757 1225 1557 Acyl Lipid Metabolism Gene Families AT1G24180 82.111 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00757 K26077 - gmx:100780908 1763.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00757 06 20154568 20169254 Cca06g00757 06 20154568 20169254 ECH