Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00741 ATGGATTATCATCTGCTGCAGATAGTGGCACTGCTGGCAGTGATGACATTTGGAGAAGCAATAAGGAAAACAACAGGAGCATGCAGTTCAGAAGACTTGGAAGGCTTGATGGGCTTCAAGAGTGGTATTCAGATGGATACGTCTGGTCGGTTGGCAAAGTGGGTTGGTAGTAGCTGCTGTGAATGGGAAGGTATTGTGTGTGACAATGCCACCACTAGAGTGACACAGATACATCTCTCAGGGCTCATTGAAAAAGATTTGTTTCAAACCCAAATGGTTGGTCAGCTTTCCCCTTCCATAACACTCCTCACCTCTCTAGAAACCCTTGATCTTGGTGGCTTAGTAGGCCTCAGTGGAACCATTCCACAAACAATTGGCATGCAAATGCCAAAGCTCCAAAAGCTCTACCTTTATGGCAACAATTTAACTGGGCCAGTGCCAGAAAGCATTGGTGATTTGCCAAACCTCCAGGAACTGGCACTTCATGAAAATAGGATATCTGGGTCAATCCCTTCAAGCCTTGGAAGCTTAAAAAACCTCAAAAGGTTGCTGCTTTACTCAAACCAAATTTCAGGTACAATACCCCTCTCACTTGGGAATTTGACCAATTTGGTAGAGTTGGATGTTCATGACAATGCTATTATGGGTCATATACCGGACAGCATTGGTCAGATGCAAGCTCTGGAGAAGCTTGATCTTTCAAGCAACATGCTAACTGGAAGCATACCTTCTTCACTAACCAATTTAACTTCCATTTCAGTTTTGTACATGGACACCAACAATCTTGAGGGAACCATCCCATTTCCCTCAAGATATGGTGATATGCTTTCTCTGGCCTTCTTAAGACTCCACAATAACCACCTGAGTGGAAATATACCTCCCAGTTTTGGCTACCTGGTTTCCCTTCAAAGAGTTTCATTATCAAACAACCAACTTGAAGGAGAATTGCCTTCTAGTTTGGGCAATTGGCACTCCTTGTCAGAGCTTTACCTCAGTGGCAACTCCTTGTCTGGCCAAATACCAAAATCAATAGGCCAACTCTCTCAGCTCATAATGTTGAACATTTCCCATAATTTGATTGAATTGCCCTTGCCTCAAGAGATGTCTTCCCTTCAAAACCTTCAGACACTTGATCTTTCTTTCAACCCTTTGAACCTCTCTTCCATCCCATCATGGCTAACAAGCCTTTCATCACTTTCCCGCATATACCTTGCAGGCTGTGGCATCAAGGGTCAAATTCCAGACTCATTGCAAACAACAAAGAGTCCAATACAGGAACTGGACTTATCAGGGAACCTTCTCAGTGGAATCATACCGTCATGGATAGGATCCCTCAGTCAGCTCTACATGTTAAACCTCTCAAGGAATTCACTTGATTCACACATACCTGATTCCCTCACAAACTTACCTGATCTTGGTGTTCTTGATCTTCACTCAAATAAGTTAACAGGCTCCATAACAAGAGTATTTGGCACTGAACAAGGTACTTCTGGGGGATCACTAACATACATTGATCTTTCTGATAATAACTTCTCAAGTGGAGTTGAGGCAGTTGGTGTGGGAGAGCAGTTAAACATTCAGTACCTCAATTTGTCTCATAACTTTCTGAAGGGTACATTGCCAAGTTCCCTTGGAAGACTGAATTTTATTCACTGTTTGGATTTGAGCTTCAATGAATTGGCTTCCAACTTGCCAGATGTGCTGGCAAAGTTGACATTGTTGGAGAGACTGAAGCTGCAAAGCAATCACTTCAGTGGTAACATACCCAATGGATTTCTGAAGTTGAGAAAGCTGAAGGATTTGGACTTGTCAGATAATGTACTTGAAGGGGAAATTCCAGAGGGTAAACCTCTGATTGACTTTCCTGGGAGCACTTATTCAGGAAACAAAGGTTTGTGCGGGAAGCCTCTTAGTCCTTGTAAACTTTAA 1929 0.4287 MDYHLLQIVALLAVMTFGEAIRKTTGACSSEDLEGLMGFKSGIQMDTSGRLAKWVGSSCCEWEGIVCDNATTRVTQIHLSGLIEKDLFQTQMVGQLSPSITLLTSLETLDLGGLVGLSGTIPQTIGMQMPKLQKLYLYGNNLTGPVPESIGDLPNLQELALHENRISGSIPSSLGSLKNLKRLLLYSNQISGTIPLSLGNLTNLVELDVHDNAIMGHIPDSIGQMQALEKLDLSSNMLTGSIPSSLTNLTSISVLYMDTNNLEGTIPFPSRYGDMLSLAFLRLHNNHLSGNIPPSFGYLVSLQRVSLSNNQLEGELPSSLGNWHSLSELYLSGNSLSGQIPKSIGQLSQLIMLNISHNLIELPLPQEMSSLQNLQTLDLSFNPLNLSSIPSWLTSLSSLSRIYLAGCGIKGQIPDSLQTTKSPIQELDLSGNLLSGIIPSWIGSLSQLYMLNLSRNSLDSHIPDSLTNLPDLGVLDLHSNKLTGSITRVFGTEQGTSGGSLTYIDLSDNNFSSGVEAVGVGEQLNIQYLNLSHNFLKGTLPSSLGRLNFIHCLDLSFNELASNLPDVLAKLTLLERLKLQSNHFSGNIPNGFLKLRKLKDLDLSDNVLEGEIPEGKPLIDFPGSTYSGNKGLCGKPLSPCKL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00741 642 Gene3D Ribonuclease Inhibitor 189 269 IPR032675 -
Cca06g00741 642 PRINTS Leucine-rich repeat signature 228 241 - -
Cca06g00741 642 PRINTS Leucine-rich repeat signature 371 384 - -
Cca06g00741 642 SMART LRR_sd22_2 323 349 - -
Cca06g00741 642 SMART LRR_sd22_2 225 251 - -
Cca06g00741 642 SMART LRR_sd22_2 595 618 - -
Cca06g00741 642 SMART LRR_sd22_2 371 388 - -
Cca06g00741 642 SMART LRR_sd22_2 177 198 - -
Cca06g00741 642 SMART LRR_sd22_2 129 155 - -
Cca06g00741 642 SMART LRR_sd22_2 201 224 - -
Cca06g00741 642 Gene3D Ribonuclease Inhibitor 270 515 IPR032675 -
Cca06g00741 642 SMART LRR_typ_2 324 347 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 201 224 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 371 396 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 275 298 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 445 468 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 129 152 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 571 595 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 469 492 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 299 323 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 153 177 IPR003591 -
Cca06g00741 642 SMART LRR_typ_2 225 249 IPR003591 -
Cca06g00741 642 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Cca06g00741 642 Pfam Leucine rich repeat 325 384 IPR001611 GO:0005515
Cca06g00741 642 Pfam Leucine rich repeat 120 166 IPR001611 GO:0005515
Cca06g00741 642 Pfam Leucine rich repeat 424 482 IPR001611 GO:0005515
Cca06g00741 642 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 4 641 - -
Cca06g00741 642 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515
Cca06g00741 642 Gene3D Ribonuclease Inhibitor 525 640 IPR032675 -
Cca06g00741 642 SUPERFAMILY L domain-like 51 320 - -
Cca06g00741 642 ProSiteProfiles Leucine-rich repeat profile. 373 397 IPR001611 GO:0005515
Cca06g00741 642 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 641 - -
Cca06g00741 642 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Cca06g00741 642 SUPERFAMILY L domain-like 425 616 - -
Cca06g00741 642 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Cca06g00741 642 SUPERFAMILY L domain-like 254 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00741 Cca-Chr6 19909137 19911323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00741 2 642 Receptor kinase-like Gene Family AT4G08850 32.656 3.86e-90 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00741 - - gmx:100799647 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00741 06 19909137 19911323 Cca06g00741 06 19909137 19911323 ECH
Cca06g00741 06 19909137 19911323 Cca06g00741 06 19909137 19911323 PCT