Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00740 ATGGATCAGTCACTGTTCACAACTCCGAGAGGATCTCTGTCATCCATTGGAGACTCTGGAGAACTCGAGGCCAATCTCACACTCAGCGAGAGGCTCAAGGTTTTCAAAAGCTCCTCCTTTGATCCCAATGCCTATGTCGCCTCCAAATCCCGCAGCATGAACGAGAAGGAGATAAGACACTTGTGCGCTTATCTTGTTGACCTGAAAAAGGCTTCAGCAGAAGAAATGCGCAAAAGTGTTCTTGCTAATTATTCAGCCTTCATACGTACATCCAAAGAGATTTCAGATCTAGAGGGAGAGCTGCTTTCTATGAGAAATCTTCTATCCACCCAGGCTGCTTTGGTTCATGGTTTAGCAGAAGGGTGCGAGCTTACTCCCATGATTAGTGGAGACGAAGATCCAGACATGGATGATATACTAGATGAAAAAACAGATATATCAAAGACAGAAAAATGGCTAATAGGATACTTAGAAACCCTTGAAGTTCTATTAGCAGAGAAAAGAGTGGATGAAGCTATGGCTGCCTTGGACGAAGGAGAAAAAATGTCAAAAGAAATTAGTGAAGGGAAAACTTTAAGTCCAAGTTTATACCGGGCATTGCAAGCTGCCATTGATGAACACAGACAAAAACTAGCGGATCAGCTAGCAGAAACTATCTGCCAGCCATCAACTCGCAGTGCAGAGATTCGATCAACAGCCCTGGCATTGAAAAATCTTGGGGATGGCCCTCGTGCTCATACTTTACTACTACATTCTCACCAAGAAACATTGCAGCGTAGCATAAAAAGCCTTCAAACTAGTAGAACTGGGGCATTTACTGCTACCCTTTCACAGCTTGTCTTTTCAACCATTTCACAGGCAGCATCAGATTCTTTGTCAATGTTTGCTGAAGAAGAACCTGCATACACGTCTGAGCTAGTAACTTGGGCAGTTACACAGGCTGAGCAATTTTCTGTTCTCCTTAAGAAATGCATTCTTGCCTCTTCAGCTGCTGCAGGAGGTTTGAGAGTTGCATCTGAATGTGTTCATGTTTGCATGAGTCACTGTTATCTACTAGAGGCTACTGGGCTGGCCCTTTCCCCTGTCTTACTAAAATATTTTAAACCCTTTGTCGAGCAAGCACTGAAGACAAACTTGAAAAGAATTGAACAAAGTACTTCTGCTCTGGCTGCTGCAGATGATTGGTTTCTTGCTTATGCACCAACGAGCAACAGACATTCTGGCCTACCTCCACCTTCTCATATTAACTTAGGTTCATTCCAACCAAAGCTTTCACGCAGTGCTCACAAATTTAACTCAATGGTTCAGGAACTATTTGAAGATGTAGGACCTCTTGAGATTCTACAATTGGATGTTCTTGCAGTTGAAGGCCTTCTACAAGGGTTCAACTTCTATGTCAATCTGCTAATAAATGCACTGCCAGGTTCAGTGGTAACTGAGAACCTGGAAGGGCACAAAATTGTTAAGATTGCTGAGACTGAAGCACAGCAGATAGCATTGCTGGCTAATGCAATATTGTTGGCAGATGAGCTGCTCCCGCGGGCTGTCGTCAAGCTTTCACATAGCAGCAAGGGTGATGACTCTCAGAAAAGAGGATCAGACAAACAGAGGCCTCCAGAACAGCGTGAACTGAAGAAAAGGCTCCAACGTGAGGTTGATCACCTGCGGGACAGCTTTTGTCGGCAACATGCTCTTGAATTCATCTTCACAGAAGATGGAGAAGCACGTCTGAATGCATTAATATATCTGGTATTGGATGGTAGAGAAGATCAACCTGAATGGTTTCCTTCTCCAATTTTTCAGGAGCTTTTTGCAAAGCTTACTGAAGTTGCAGGCATTGCAGCAGATGTGTTTGTGGGAAGGGAAAGATTTGCCACTGTTTTATTGATGAGACTCACAGAAACAGTGGTCCTGTGGCTTTCTGATGACCAAGCCTTCTGGGAAGAGATTGAGACAGGAGCAACACCTTTAGGTCCTGTCGGCCTTCAACAGCTTTATTTGGATATGCAATTTGTGATGATATTTTCATCCCAAGGTCGTTACTTATCTCGTCATCTGCATCAAGCGATTAAAAACATTATTGCTAGGGCCATCGAGGCTGTTGCTGCTACAGGTTTAGATCCCAACAGCATCTTACCCGAGGATGAATGGTTTGTTGAAGTTAGTGAAATAGCTATAAAGATGTTAACTGGGAGAGCAGCCTTTGACAGTGTAGAAGGAGGTGATTATAGCCCCACTTCATCTGTCCAAACATAA 2256 0.4366 MDQSLFTTPRGSLSSIGDSGELEANLTLSERLKVFKSSSFDPNAYVASKSRSMNEKEIRHLCAYLVDLKKASAEEMRKSVLANYSAFIRTSKEISDLEGELLSMRNLLSTQAALVHGLAEGCELTPMISGDEDPDMDDILDEKTDISKTEKWLIGYLETLEVLLAEKRVDEAMAALDEGEKMSKEISEGKTLSPSLYRALQAAIDEHRQKLADQLAETICQPSTRSAEIRSTALALKNLGDGPRAHTLLLHSHQETLQRSIKSLQTSRTGAFTATLSQLVFSTISQAASDSLSMFAEEEPAYTSELVTWAVTQAEQFSVLLKKCILASSAAAGGLRVASECVHVCMSHCYLLEATGLALSPVLLKYFKPFVEQALKTNLKRIEQSTSALAAADDWFLAYAPTSNRHSGLPPPSHINLGSFQPKLSRSAHKFNSMVQELFEDVGPLEILQLDVLAVEGLLQGFNFYVNLLINALPGSVVTENLEGHKIVKIAETEAQQIALLANAILLADELLPRAVVKLSHSSKGDDSQKRGSDKQRPPEQRELKKRLQREVDHLRDSFCRQHALEFIFTEDGEARLNALIYLVLDGREDQPEWFPSPIFQELFAKLTEVAGIAADVFVGRERFATVLLMRLTETVVLWLSDDQAFWEEIETGATPLGPVGLQQLYLDMQFVMIFSSQGRYLSRHLHQAIKNIIARAIEAVAATGLDPNSILPEDEWFVEVSEIAIKMLTGRAAFDSVEGGDYSPTSSVQT 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00740 751 Pfam Exocyst component 84 C-terminal 151 359 IPR032403 -
Cca06g00740 751 SUPERFAMILY Cullin repeat-like 143 375 IPR016159 -
Cca06g00740 751 Gene3D - 141 264 IPR042561 -
Cca06g00740 751 PANTHER EXOCYST COMPLEX COMPONENT 8 13 750 IPR033961 GO:0000145|GO:0006887
Cca06g00740 751 Coils Coil 197 217 - -
Cca06g00740 751 PANTHER EXOCYST COMPLEX COMPONENT EXO84A 13 750 - -
Cca06g00740 751 MobiDBLite consensus disorder prediction 522 545 - -
Cca06g00740 751 Pfam Vps51/Vps67 35 113 - -
Cca06g00740 751 Gene3D - 268 373 IPR042560 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00740 Cca-Chr6 19884751 19891439 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00740 K19986 - gmx:100818886 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00740 06 19884751 19891439 Cca06g00740 06 19884751 19891439 ECH