Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00727 ATGGCACAAAGCATTAATAGTCTTTGGTACTTTGATAGGTCTTCAAAGTCATCATCCAACATCCTTTCCTTCCACTCCACTGCTGAATGGAATGCTCATTTCAAAGCCACCAAAGATACTAACAAGCTGATGGTACTTGATTTCACAGCTACATGGTGTGGACCTTGCAAACTAATGGACCCAGTTATCCAAGAGTTTGCTGCAAAATTCACAGATGTTGAGTTCATCAAGATTGATGTGGAGGAGTTAATGGAAGTGTCTCAACCACTTCAAGTCCACCAATTGCCAACATTCATACTCGTTAAGAAAGGTAAAGTCACTGATAGAGTGGTGGGAGTAAGAAAGGAGGAGCTGAAAAGATCGATTGAGAAGCACAGAAAATAG 384 0.4089 MAQSINSLWYFDRSSKSSSNILSFHSTAEWNAHFKATKDTNKLMVLDFTATWCGPCKLMDPVIQEFAAKFTDVEFIKIDVEELMEVSQPLQVHQLPTFILVKKGKVTDRVVGVRKEELKRSIEKHRK 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00727 127 Pfam Thioredoxin 34 123 IPR013766 -
Cca06g00727 127 PANTHER THIOREDOXIN 1 127 - -
Cca06g00727 127 CDD TRX_family 32 123 - -
Cca06g00727 127 Gene3D Glutaredoxin 11 127 - -
Cca06g00727 127 PANTHER THIOREDOXIN 1 127 - -
Cca06g00727 127 PRINTS Thioredoxin family signature 44 52 - -
Cca06g00727 127 PRINTS Thioredoxin family signature 52 61 - -
Cca06g00727 127 PRINTS Thioredoxin family signature 91 102 - -
Cca06g00727 127 ProSitePatterns Thioredoxin family active site. 45 63 IPR017937 -
Cca06g00727 127 SUPERFAMILY Thioredoxin-like 15 125 IPR036249 -
Cca06g00727 127 ProSiteProfiles Thioredoxin domain profile. 15 127 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00727 Cca-Chr6 19725839 19726880 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00727 K03671 - gmx:100527298 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00727 06 19725839 19726880 Cca06g00727 06 19725839 19726880 ECH