Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00721 ATGCACTTCCTCACCGCACCCTCTTCTTCTCTTCTCTCGCCCCATTTGACCCCTTCGCTCTTCTGCCCCCCTCTTTACTTCTCCTCCGCCTCGACCGGGAGGCTGCGCCGGTTCGCGCTTCTCAACGAACCGGGTTCGGTTCTCAACTGTTACAAGGGTTTGTGCTGGTCCTGCTCCGGGTTCTTGCGGCGCTGCAAGGATTGGGAGGGCGAGTTCTCCTCTCTGGAGTCCCAGATTTTGGAGTTCATGCAGGGTTCCGATAAACCTGGAGTGTTTCCCACAAAGGAGGAGTTGGTTGCTGCGGGGAGGGTGGATTTGGTCAACGCTATTGTTAACGAAGGAGGGTGGCTTGCGTTTGGGTGGGATTTGAATGATGGGTTGGGGGAAATTCGCGGTTTTGAAGATAGGGGTAGCGGTGGAATTGAGGGTAATGCAACTCGGCCTTCTGGGGTTGcttcttcttcttcttcttcttctCGAACGGATGGTTCAGTGAAAATTGAAACCGGTGAATCTGGCATTGAGGGTATATTGAATCGGTTGGAGAAACAAAGAAATAGTGTTTTAGGACTTGGCTTAATAGAGAAAGAAGATGGTGTTTTTAGCGAAAGTAATGAAGATAAAGATGAATGGGATCATAGAACAACAATGAATGCATTAGCTGCTGGCCTTGAAAATAGTAGTAGAGCGTCCTCATTGAGCCCTACAAGCACTCATCTTAGTGGTTCTCGGATCAAACATGATCAGCACGGATTAGGTTCTGAAAATTTAAGAAACTCGCTTGAGCCAGAGATGTGGAGAAGTTGGATTATTCAGAGAACTGGTGTTTCGGATGCAGATTTTGAAGATGCTGAAATTGTTCCTGGTGAAACTCAGAAAGGAGGTATCAGTGGTGCTTCAGGACAACCTGATATCCTCAACGGAAGGGAGTTTTCTTCTGAACTTATAAACAAAGAAACAGGATTATATTCTCTTGATGGAAATGCAAATAATAATGACATTAAATCCCGTATACAGCATCTGAAATTGGAGCTATCTTCTGTTCTTCACTCGTTGAGGTCTAGCACAGATATAACTGCAATGCAGACAGACCCAAAGCACTCTTCTGATAATCTAGCAAAGCTTTCCGATGCTTGGGAATTCCAGGAAAATGAGATGATAAATGCTCAAGACAGGTTGCGTTCTATACGGGCTAAGTTGGCAGTGTTAGAAGGAAAGATGGCATTGGCAATAATGGATGCACACAAGGTTGTTGAAGAAAAGCAGAAGAAGATTAATAATGCTCAAAAAGCTTTGCAAATGCTAAAGACTACTTGTGTAATTTGGCCAACTAAGGCTGAAGAAGTACTTTTAACAGGATCATTTGATGGTTGGTCCACCAAGAGAAAGCTGGAGAAGTTAAGTAGTGGTATGTTTTCTGTGAACTTGCTGCTGTATCCTGGAAGATATGAGATGAAATTCATTGTAGATGGAGAATGGAAAGTTGATCCGTTACGCCCTGTTGTTACAAGCCATGGCTATGAGAATAATCTTCTCATCATTAGTGATTGA 1551 0.4371 MHFLTAPSSSLLSPHLTPSLFCPPLYFSSASTGRLRRFALLNEPGSVLNCYKGLCWSCSGFLRRCKDWEGEFSSLESQILEFMQGSDKPGVFPTKEELVAAGRVDLVNAIVNEGGWLAFGWDLNDGLGEIRGFEDRGSGGIEGNATRPSGVASSSSSSSRTDGSVKIETGESGIEGILNRLEKQRNSVLGLGLIEKEDGVFSESNEDKDEWDHRTTMNALAAGLENSSRASSLSPTSTHLSGSRIKHDQHGLGSENLRNSLEPEMWRSWIIQRTGVSDADFEDAEIVPGETQKGGISGASGQPDILNGREFSSELINKETGLYSLDGNANNNDIKSRIQHLKLELSSVLHSLRSSTDITAMQTDPKHSSDNLAKLSDAWEFQENEMINAQDRLRSIRAKLAVLEGKMALAIMDAHKVVEEKQKKINNAQKALQMLKTTCVIWPTKAEEVLLTGSFDGWSTKRKLEKLSSGMFSVNLLLYPGRYEMKFIVDGEWKVDPLRPVVTSHGYENNLLIISD 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00721 516 MobiDBLite consensus disorder prediction 224 242 - -
Cca06g00721 516 MobiDBLite consensus disorder prediction 147 166 - -
Cca06g00721 516 Gene3D Immunoglobulins 433 516 IPR013783 -
Cca06g00721 516 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 41 515 - -
Cca06g00721 516 Coils Coil 386 406 - -
Cca06g00721 516 MobiDBLite consensus disorder prediction 224 256 - -
Cca06g00721 516 Pfam Glycogen recognition site of AMP-activated protein kinase 438 515 IPR032640 -
Cca06g00721 516 CDD E_set_AMPKbeta_like_N 437 514 - -
Cca06g00721 516 SUPERFAMILY E set domains 437 515 IPR014756 -
Cca06g00721 516 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 41 515 - -
Cca06g00721 516 Coils Coil 411 438 - -
Cca06g00721 516 MobiDBLite consensus disorder prediction 137 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00721 Cca-Chr6 19617467 19622125 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00721 - - ccaj:109801281 920.228
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00721 06 19617467 19622125 Cca06g00721 06 19617467 19622125 ECH