Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00716 ATGAAAGCAGGCACGATGGCGTTCAAGATCAAGAACGGCACATCTTTCTTGTTCGTCATCCTCAGCTTTGGTATATTTTCATCGACAAGAAGCACAAAGGGGGGACACTGGGTGGAGGTGCAACGCAGCATAGGCATCTCCGCCATGCACATGCAGGTAATGTTCGACAACAAGGTGGTGATCTTCGACCGCACGGACTTCGGCCCCTCCAACATCTCCCTCTCGAACGGTCGCTGCCGCTACAACCCGCGCGACATGGCCCTAAAACTGGACTGCACCGCGCACTCGGTGCTCTACGACCCCGCCGCCAACACCCTCCGGCCCCTCACGCTCCACACCGACGCCTGGTGCTCCTCCGGCGCCCTCACCCCCGACGGCACGCTCCTCCAGACCGGAGGCTTCAACGACGGCTACACCCGCCTCCGCTCCTTCACCCCCTGCCCCCACCACGACACCTGCGACTGGCGCGAACACACCTCCCACAACCTCTCGACCAGCCGGTGGTACGCCTCCAACCAGATCCTCCCCGACGGCAAAATCATCATCGTGGGTGGCCGCAACTCCTTCACCTACGAGTTCATCCCCAAGGCCAAAACCGACAAGCCCTTCTACTTTCTCCCCTTCCTGAAACTCACCCGCGACCCCATCCGCGGCGAGGAGAACAATCTTTACCCCTTCTTGCACCTCCTCCCCGACGCCAACCTCTTCATCTTCGCCAACCGCAACTCCATCCTCTTCGACTACACCCGCAACAAAGTCCTCAGAACCTTCCCTCTCCTCCCCGGACGAGAAAAGCGGAACTACCCCAGCACCGCCTCCTCCGTTCTCCTCCCGTTAAACCTAACGGCCCTTAACGGAACGCGTTTACCGGTTGCAGAAATCATGATCTGCGGCGGGGCTTACCCCGGTGCTTTCACCTTGGCCAACAAGCTCAAAATATTTCTAGAAGCTTCCAGAACGTGCGGGAGGCTGAGAGTGTTCGACGCTAACCCTAAATGGGTCATGGAGAACATGCCCATGCCACGTGTCATGCCGGATATGATTTTGCTTCCGACTGGGAATGTTGTTATTTTAAACGGTGCCATGAATGGGACCGCAGGCTGGGAGAATGCGGTGAACCCGGTTTTCTATCCGGTTTTGTATAAACCCGGTTTGAGGAGCTTCGAGATGCTGTCTCCGGCGAGTACTCCGCGGATGTATCATTCGTCTTCTGTGCTTCTGCCAGATGGCAGGATTTTAGTGGGTGGGAGCAACCCTCACAGGTTGTATCACTTTCGCGCGTATTACCCTACCGAGTTGAGTTTGGACGCGTATTGCCCGGAGTATTTGGGGGCGGAGGCGGAGGCGTGGCGGCCATCCATTGTGGCAGTGAACGATACGGCGCCGTATGGGAGGGTTTTTGCGGTGACGTTTTCGTTGAGGGAGTGGCTGGGAGGGGTGGCTGTGACGCTTGTGGCGCCGTCGTTCACGACGCACTCGTTTGCGATGAACCAGAGggtggtggtgctggatgtggtgggggtgaaggaggtggcggagtttgggtaccgggtggtggcgcgtggGCCGCCCTCGCTGGCGGTGGCGCCGCCTGGGTACTATATGCTTTTTATTGTGCATGCGGGAGTTCCCAGCGCTGCGGTGTGGGTTCAGGTGAAGTGA 1662 0.5572 MKAGTMAFKIKNGTSFLFVILSFGIFSSTRSTKGGHWVEVQRSIGISAMHMQVMFDNKVVIFDRTDFGPSNISLSNGRCRYNPRDMALKLDCTAHSVLYDPAANTLRPLTLHTDAWCSSGALTPDGTLLQTGGFNDGYTRLRSFTPCPHHDTCDWREHTSHNLSTSRWYASNQILPDGKIIIVGGRNSFTYEFIPKAKTDKPFYFLPFLKLTRDPIRGEENNLYPFLHLLPDANLFIFANRNSILFDYTRNKVLRTFPLLPGREKRNYPSTASSVLLPLNLTALNGTRLPVAEIMICGGAYPGAFTLANKLKIFLEASRTCGRLRVFDANPKWVMENMPMPRVMPDMILLPTGNVVILNGAMNGTAGWENAVNPVFYPVLYKPGLRSFEMLSPASTPRMYHSSSVLLPDGRILVGGSNPHRLYHFRAYYPTELSLDAYCPEYLGAEAEAWRPSIVAVNDTAPYGRVFAVTFSLREWLGGVAVTLVAPSFTTHSFAMNQRVVVLDVVGVKEVAEFGYRVVARGPPSLAVAPPGYYMLFIVHAGVPSAAVWVQVK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00716 553 Pfam Glyoxal oxidase N-terminus 49 299 IPR009880 -
Cca06g00716 553 CDD E_set_GO_C 451 552 IPR015202 -
Cca06g00716 553 SUPERFAMILY E set domains 448 552 IPR014756 -
Cca06g00716 553 Gene3D Immunoglobulins 450 553 IPR013783 -
Cca06g00716 553 PANTHER F14L17.20 PROTEIN 24 552 - -
Cca06g00716 553 Pfam Galactose oxidase-like, Early set domain 451 552 IPR015202 -
Cca06g00716 553 PANTHER SECRETED PROTEIN-RELATED 24 552 - -
Cca06g00716 553 Gene3D - 31 449 IPR037293 -
Cca06g00716 553 SUPERFAMILY Galactose oxidase, central domain 96 443 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00716 Cca-Chr6 19364413 19366266 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00716 - - gmx:100813021 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00716 06 19364413 19366266 Cca06g00716 06 19364413 19366266 ECH