Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca06g00711 | ATGGGACAAGTGTTTGGTTGCGTGCAAGTGGATCAGTCAAGTGTGGCAATCAAGGAAGGGTTCGGGAAGTACAATGATGTTCTTGACCCTGGTTGCCACTGTGTGCCTTGGTGTTTCGGCAGTCGTGTGGCTGGTGCCCTTTCTTTGCGTGTCAAACAGCTCGATGTTCGCTGTGAAACTAAGACAAAGGACAATGTCTTTGTTACTGTGGTTGCTTCTATCCAATATCGAGTATTGGCAGAAAAGGCAGTGGATGCTTATTACAAACTCAGCAATACCAGTGCACAGATACAATCCTATGTCTTTGATGTTATCAGAGCAAGCGTTCCAAGGATGGAACTAGATGCTACTTTTGAGCAGAAGAATGATATTGCAAAAGCTGTGGAGGAAGAACTTGAAAAGGCTATGTCAGCTTATGGGTACGAGATAGTTCAGACTCTTATTGTGGATATTGAGCCAGATGAGCATGTAAAGAAAGCCATGAATGAGATAAATGCTGCTGCAAGATTGAGGGTGGCTGCAAACGAGAAAGCAGAAGCAGAGAAGATATTGCAGATCAAGCGAGCAGAAGGCGATGCAGAATCAAAGTACTTAGCAGGGCTTGGCGTTGCTCGTCAGCGCCAAGCCATAGTAGATGGACTGAGGGACAGTGTGCTTGCTTTCTCTGAGAATGTGCCTGGCACAACATCAAAGGATATCATGGACATGGTTCTCATGACCCAATACTTTGACACAATGAAGGACATTGGTGCATCCTCAAAATCCAATGCTGTTTTCATTCCACACGGACCTGGTGCTGTAAATGATGTTGCTTCACAAATCAGGGATGGTCTTCTCCAAGGAAATGCAACACTGTCTTGA | 861 | 0.4518 | MGQVFGCVQVDQSSVAIKEGFGKYNDVLDPGCHCVPWCFGSRVAGALSLRVKQLDVRCETKTKDNVFVTVVASIQYRVLAEKAVDAYYKLSNTSAQIQSYVFDVIRASVPRMELDATFEQKNDIAKAVEEELEKAMSAYGYEIVQTLIVDIEPDEHVKKAMNEINAAARLRVAANEKAEAEKILQIKRAEGDAESKYLAGLGVARQRQAIVDGLRDSVLAFSENVPGTTSKDIMDMVLMTQYFDTMKDIGASSKSNAVFIPHGPGAVNDVASQIRDGLLQGNATLS | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca06g00711 | 286 | PANTHER | HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 2 | 1 | 283 | - | - | |
| Cca06g00711 | 286 | SMART | PHB_4 | 5 | 165 | IPR001107 | - | |
| Cca06g00711 | 286 | PANTHER | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL | 1 | 283 | - | - | |
| Cca06g00711 | 286 | Coils | Coil | 118 | 138 | - | - | |
| Cca06g00711 | 286 | Coils | Coil | 157 | 190 | - | - | |
| Cca06g00711 | 286 | CDD | SPFH_like_u4 | 10 | 278 | - | - | |
| Cca06g00711 | 286 | Gene3D | Band 7 domain | 41 | 167 | IPR036013 | - | |
| Cca06g00711 | 286 | SUPERFAMILY | Band 7/SPFH domain | 46 | 171 | IPR036013 | - | |
| Cca06g00711 | 286 | Pfam | SPFH domain / Band 7 family | 9 | 182 | IPR001107 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca06g00711 | Cca-Chr6 | 19282310 | 19285269 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca06g00711 | - | - | gmx:100789295 | 532.332 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca06g00711 | 06 | 19282310 | 19285269 | Cca06g00711 | 06 | 19282310 | 19285269 | ECH |