Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00710 ATGTCCACCAGCGTTGCATTAGAGTCTCTCTTCCCTCTTTGCCGAAGAGAATCTCCATTTCACCGCCACAAACCAATCCCCTTCAGACCCTTCTTTCTCACTTGTTCTTCCAACCTTAATGATGCCTCCTTCGTTTCCCACCAACCTCGTAGGACCCTCTCTCCCGCACTTGAAGCTTCCCTTGCGGACACACCCATCCTCCACTCCCTTCAATGCCCTCAAACCATCACCAACACTTTCCAAATCAACCGAACCCAAATGGTGGAGGGAAAGATTTTTGTGAGATTAGATCCCGGAAAGGATTTGAGGGATCGGGAGCTTACCGTGAGTTGCAATATACCCGGAAAATGGATTCTTCACTGGGGAGTTACCTATGTTAATGATGTTGGAAGGGAATGGGATGAACCTCCTTGTGATATGATACCCCCTGGCTCTGTTCCTGTAAAGGAATATGCAATAGAGACCCCTTTGAAGAATTCATCCTTGTCAGCTGAAGGAGATACGCTTCAAGAAGTCAGGATTGATCTTAAAGACAACAATGGAATTTCAGCGGTTAATTTTGTTCTCAAGGATGAGGAGAATGGAACTTGGTATAAAAACAAAGGAAGAGATTTCAAGGTTTCTTTGATCAACAACCTTAAGGCGAATTCAGATACTAATATAATTGGACCTAAAAGGGGCTTTGATTTATGGCCAGGGAATTTGGGGCAGATATCTGAGATGTTCTTCAAGTCAAGAGCTGACAGAGATGAAAGAAGTGAATCCAGAGTTCCAGAAAAAGAAAATAATCAACCAGAACGTTTCTATGAAGAAGTGTCTGTAACAAAGAAGGTTTCAGTTAAGAACTCTATCAGTGTCTCCACCAAAAAATGCTTCGAGTCTGGGCAAGTTAAGGACCTCATACATTTTGAAACTGATCTACCTGGGGATGCTGTCCTTCACTGGGGAGTTTGTAGGGATGATTCAAAAAAGTGGGAAGTTCCACCTCCTCCTCATCCACCAGGCACGGTATCATTTAAAGGCAGGGCTTTGAGAACTCAATTACGGCCAAGAGATGGTGGAAAAGGATCTTCAGCACTAATCACCTTAGAAGAAGGATTTTCAGGATTTGTTTTTGTTCTTAAGCAAAATGAAAATACTTGGTTCAAGTACATGGGAAATGACTTTTATATCCCCCTTTCAAGTCCTAATGGCTTACTTAATGTTGGCAACATAAAGGATCAGTCAGCAGGTGTGCAGAGGGAAGTGATTAAAGAGGCTAGTCAAGATACTTCTTTCTTTGCATTTGCTGATACAATAGCCAATGACATAAGAAATTTGATCACAGACAATTCCTCTgagaagagtcaaaagacaaaatccaaaaaagaacaacaaaGCATTTTTCAGGAAATTGAAAGACTAGCTGCTGAAGCCTATAATATGTTCAGAAGCTCCATTCCAATTTTCTCAGAGGCAACTATTGCAGAACCTGTAGCAACTTTTGTGGAACCTGAGACTGCTATGGTGGAACCTCAGGTAACAACTATTGTGGAACCTGAGACAACTATGGCGGAAACTCAGGCAACAACTACTGTGGTACCAGCGACTTCAGTGGAATCAGATACACTGTCCCTGGATCCAAAAATATGCTCAGGGACAGGTACAGGATATGAAATTTTGTGCCAAGGGTTTAACTGGGACTCTCATAAATCCGGAAGATGGTACATGGAGCTTAAAGAGATAGCTTCAGAACTAGCATCACTTGGATTCACTGTGGTCTGGTTACCACCACCTACAGAGTCTGTTTCACCTGAAGGATACATGCCTAAGGATTTATATAATTTAAGTTCCAGATACGGAAACATTTATGAACTGAAAGATTTGGTGAAAACATTTCATGAAGTTGGGATCAAAGTTCTAGGAGATGCAGTTTTAAATCACCGCTGTGCTCATTATCAGAATAAGAATGGTGTTTGGAACATATTTGGAGGCCGTCTTAACTGGGATGATAGTGCAGTTGTTGGTGATGATCCACATTTTCAGGGTAAGGGCAACAAGAGTAGTGGAGATAATTTTCATGCTGCTCCAAACATTGATCATTCACAGGAATTTGTGAGAGAGGATCTCAAAGAATGGTTATGCTGGTTGAGGAAAGAAGTTGGGTATGATGGATGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGAATACATAGATGCAAGTGAACCTTATTTTGCTGTGGGAGAGTTCTGGGATTCTCTCAGTTATACATCTGGTGAAACGGATCATAATCAAGATGCTCATAGGCAGAGGATAATTGACTGGATCAGTGCCACTAATGGTACCGCTGGTGCATTTGATGTTACCACTAAAGGAATTCTCCACTCTGTAAGCATTAACTCTGGCATTAGAAAAATGTGA 2415 0.4124 MSTSVALESLFPLCRRESPFHRHKPIPFRPFFLTCSSNLNDASFVSHQPRRTLSPALEASLADTPILHSLQCPQTITNTFQINRTQMVEGKIFVRLDPGKDLRDRELTVSCNIPGKWILHWGVTYVNDVGREWDEPPCDMIPPGSVPVKEYAIETPLKNSSLSAEGDTLQEVRIDLKDNNGISAVNFVLKDEENGTWYKNKGRDFKVSLINNLKANSDTNIIGPKRGFDLWPGNLGQISEMFFKSRADRDERSESRVPEKENNQPERFYEEVSVTKKVSVKNSISVSTKKCFESGQVKDLIHFETDLPGDAVLHWGVCRDDSKKWEVPPPPHPPGTVSFKGRALRTQLRPRDGGKGSSALITLEEGFSGFVFVLKQNENTWFKYMGNDFYIPLSSPNGLLNVGNIKDQSAGVQREVIKEASQDTSFFAFADTIANDIRNLITDNSSEKSQKTKSKKEQQSIFQEIERLAAEAYNMFRSSIPIFSEATIAEPVATFVEPETAMVEPQVTTIVEPETTMAETQATTTVVPATSVESDTLSLDPKICSGTGTGYEILCQGFNWDSHKSGRWYMELKEIASELASLGFTVVWLPPPTESVSPEGYMPKDLYNLSSRYGNIYELKDLVKTFHEVGIKVLGDAVLNHRCAHYQNKNGVWNIFGGRLNWDDSAVVGDDPHFQGKGNKSSGDNFHAAPNIDHSQEFVREDLKEWLCWLRKEVGYDGWRLDFVRGFWGGYVKEYIDASEPYFAVGEFWDSLSYTSGETDHNQDAHRQRIIDWISATNGTAGAFDVTTKGILHSVSINSGIRKM 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00710 804 SUPERFAMILY (Trans)glycosidases 551 799 IPR017853 -
Cca06g00710 804 CDD AmyAc_arch_bac_plant_AmyA 553 802 - -
Cca06g00710 804 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 79 795 - -
Cca06g00710 804 MobiDBLite consensus disorder prediction 246 267 - -
Cca06g00710 804 Pfam Alpha amylase, catalytic domain 579 737 IPR006047 GO:0005975
Cca06g00710 804 Gene3D Glycosidases 552 804 - -
Cca06g00710 804 SMART aamy 552 802 IPR006047 GO:0005975
Cca06g00710 804 PANTHER ALPHA-AMYLASE 79 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00710 Cca-Chr6 19260396 19272448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00710 56 795 Glycoside Hydrolase AT1G69830 55.705 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00710 K01176 - gmx:100810333 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00710 06 19260396 19272448 Cca06g00710 06 19260396 19272448 ECH