Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca06g00703 | ATGAGAAGAGATCACAAAACGCTAACAAAACTCGTAGCAGATGGCTTCTACAAAGAAGCACtctccctcttctcttcttcttcttcCCACACCCTTCACTCCTTCACATTCCCCACTCTCTTCAAAGCATGCACCAACCTCAATTCCCTCTCCCACACCCAAACCCTCCATGCCCATCTCCTCAAAACCGGTTTCCACTCCGACCCCTACGCTTCCTCCGCCCTCACCGCCGCCTATGCCGCCAATCCTCGCCGTCTCCTCGACGCGCTCAAGGTGTTCGACGAAATGCCCCAACCACACGTCGCTTCTCTCAACGCCGCGCTTTCCGGCTTCTCGCGAAACGGGCGTCCGGGAGAGGCTTTTAGGCTGTTTCGGCGAGTTGGGTTGGGCCCCTTGAGGCCCGACTCGGTCACGATCGCGTGCATGGTCAGTGTTCCTCACGTGGGTTTCGACCACGTTGCGCTGATGCATTGCTGCGGGGTGAAGTTAGGGGTTGGATTTGATGTCTATGTTGCCACCTCGCTTGTCACTGCGTATTCCAAGTGTGGAGAGTTAGTTTCCGCGACTAGGGTGTTTGAGGAGTTGTCTGTGAAGAGTGTGGTGAGTTACAACGCTTTCATTTCGGGTTTGTTGCAGAATGGGGTTCCTCGTTTGGCGTTGGATGTGTTTAAGGAGATGACGAGGGAGGAGTGTTTGGAGTGTAAAGTCACTTCAGTGACGTTGGTGTCTGTCCTTTCTGCGTGTGGTAGTGTACCAAGTGTTCGTTTTGGGAGGCAGGTCCATGGACTGCTTGTGAAACTTGAAGCGGGTGATGGGGTTATGGTGGTGACTGCACTCGTGGATATGTATTCAAAGTGTGGTTTTTGGAGTTCTGCTTTTGATGTTTTCATTGGTGTGGATGGGGATAAGAGGAACTTGATCACTTGGAACTCCATGATTGCGGGAATGATGTTGAACAAAGAGAGTGAGAGAGCTGTTGACATGTTTCGGAGGCTGGAATCTGAAGGGTTGAAGCCTGATTCCGCTACTTGGAATTCCATGATCAATGGGTTTGCACAACAAGGGGTGTGTGGGGAAGCTTTTAAGTACTTTAGGGAAATGCAGTCTTCTGGTGTGCCTCCTTGTTTGAAAATTATTACTAGCCTTTTGTCAGCGTGCGCGGATTCGTGTGTGTTGAGACATGGAAAAGAGATACATGGGTATGCTATAAGAACTTACATCAATAGGGATGACTTTTTGGCGACTGCTCTGGTTGACATGTACATGAAATGTGGGCATGCTTCTTGGGCGCGAGGAGTTTTTGACCAGTTTTATGCAAAACCTGATGATCCAGCATTTTGGAATGCAATGATAGGGGGGTATGGAAGAAACGGAGACAATGAGTCTGCCTTTAAAATCTTTGATGAAATGCTGGAAGAAATGGTTCGACCAAACAGTGCAACATTTGTTAGTGTTTTATCTGCTTGCAGCCACACGGGTCAGGTTGACAGAGGATTACATGTTTTCAGAATGATGAGAAGAGAGTATGGCTTGCAGCCAAAGCCTGAGCATTTTGGCTGCATGGTTGATCTTTTAGGTCGGTCTGGTCGGTTGGGTGAGGCCCAAGACCTGGTGCAGGAATTAGCAGAGCCTCCTCCTTCTGTTTTTTCTTCTTTACTTGGTGCATGTAGGTGTTACCTAGATTCCAATCTTGGGGAAGAAATGGCCATGAAGCTTCTAGATTTAGAACCAGAAAACCCAGCTCCTCTGGTGGTCTTGTCTAACATATATGCTGGGCTGGGAAGATGGAAGGAAGTAGAAAGGATAAGAGGGATAATCACAGATAAGGGATTGGACAAATTCTCTGGCTTTAGCATGATAGAAGTTGCATGA | 1872 | 0.4786 | MRRDHKTLTKLVADGFYKEALSLFSSSSSHTLHSFTFPTLFKACTNLNSLSHTQTLHAHLLKTGFHSDPYASSALTAAYAANPRRLLDALKVFDEMPQPHVASLNAALSGFSRNGRPGEAFRLFRRVGLGPLRPDSVTIACMVSVPHVGFDHVALMHCCGVKLGVGFDVYVATSLVTAYSKCGELVSATRVFEELSVKSVVSYNAFISGLLQNGVPRLALDVFKEMTREECLECKVTSVTLVSVLSACGSVPSVRFGRQVHGLLVKLEAGDGVMVVTALVDMYSKCGFWSSAFDVFIGVDGDKRNLITWNSMIAGMMLNKESERAVDMFRRLESEGLKPDSATWNSMINGFAQQGVCGEAFKYFREMQSSGVPPCLKIITSLLSACADSCVLRHGKEIHGYAIRTYINRDDFLATALVDMYMKCGHASWARGVFDQFYAKPDDPAFWNAMIGGYGRNGDNESAFKIFDEMLEEMVRPNSATFVSVLSACSHTGQVDRGLHVFRMMRREYGLQPKPEHFGCMVDLLGRSGRLGEAQDLVQELAEPPPSVFSSLLGACRCYLDSNLGEEMAMKLLDLEPENPAPLVVLSNIYAGLGRWKEVERIRGIITDKGLDKFSGFSMIEVA | 623 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca06g00703 | 623 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 199 | 233 | IPR002885 | - | |
| Cca06g00703 | 623 | PANTHER | OS07G0578800 PROTEIN-RELATED | 9 | 617 | IPR045215 | GO:0003723|GO:0009451 | |
| Cca06g00703 | 623 | Gene3D | Tetratricopeptide repeat domain | 270 | 399 | IPR011990 | GO:0005515 | |
| Cca06g00703 | 623 | Gene3D | Tetratricopeptide repeat domain | 150 | 255 | IPR011990 | GO:0005515 | |
| Cca06g00703 | 623 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 9 | 617 | - | - | |
| Cca06g00703 | 623 | TIGRFAM | PPR: pentatricopeptide repeat domain | 201 | 231 | IPR002885 | - | |
| Cca06g00703 | 623 | TIGRFAM | PPR: pentatricopeptide repeat domain | 343 | 374 | IPR002885 | - | |
| Cca06g00703 | 623 | TIGRFAM | PPR: pentatricopeptide repeat domain | 481 | 513 | IPR002885 | - | |
| Cca06g00703 | 623 | TIGRFAM | PPR: pentatricopeptide repeat domain | 307 | 341 | IPR002885 | - | |
| Cca06g00703 | 623 | TIGRFAM | PPR: pentatricopeptide repeat domain | 447 | 478 | IPR002885 | - | |
| Cca06g00703 | 623 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 478 | 508 | IPR002885 | - | |
| Cca06g00703 | 623 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 305 | 339 | IPR002885 | - | |
| Cca06g00703 | 623 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 443 | 477 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | E motif | 559 | 621 | IPR046848 | - | |
| Cca06g00703 | 623 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | IPR002885 | - | |
| Cca06g00703 | 623 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 100 | 134 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | PPR repeat | 103 | 126 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | PPR repeat | 518 | 541 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | PPR repeat | 173 | 196 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | PPR repeat | 277 | 296 | IPR002885 | - | |
| Cca06g00703 | 623 | Gene3D | Tetratricopeptide repeat domain | 5 | 147 | IPR011990 | GO:0005515 | |
| Cca06g00703 | 623 | Gene3D | Tetratricopeptide repeat domain | 447 | 612 | IPR011990 | GO:0005515 | |
| Cca06g00703 | 623 | SUPERFAMILY | TPR-like | 283 | 474 | IPR011990 | GO:0005515 | |
| Cca06g00703 | 623 | Pfam | PPR repeat family | 305 | 352 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | PPR repeat family | 198 | 248 | IPR002885 | - | |
| Cca06g00703 | 623 | Pfam | PPR repeat family | 446 | 490 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca06g00703 | Cca-Chr6 | 19202702 | 19207058 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca06g00703 | 33 | 622 | Glycoside Hydrolase | AT3G49170 | 28.381 | 4.49e-72 | 246 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca06g00703 | - | - | gmx:100809263 | 1058.13 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca06g00703 | 06 | 19202702 | 19207058 | Cca06g00703 | 06 | 19202702 | 19207058 | ECH |